(24 nodes) Mixed, incl. Copine, and Microtubule severing ATPase activity network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC2A13	Solute carrier family 2 member 13; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (648 aa)
	TMEM117	Transmembrane protein 117. (514 aa)
	FIGN	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family. (759 aa)
	PPP1R1C	Protein phosphatase 1 regulatory inhibitor subunit 1C. (109 aa)
	BCO2	Beta-carotene oxygenase 2. (579 aa)
	RFX3	Regulatory factor X3. (794 aa)
	CPNE6	Copine 6. (655 aa)
	FAM136A	Family with sequence similarity 136 member A. (138 aa)
	CPNE7	Copine 7. (651 aa)
	M3Y8R1_MUSPF	Uncharacterized protein. (103 aa)
	TMEM161B	Transmembrane protein 161B. (487 aa)
	MZF1	Myeloid zinc finger 1. (753 aa)
	TSPAN11	Tetraspanin. (253 aa)
	FAM199X	Family with sequence similarity 199, X-linked. (388 aa)
	CPNE4	Copine 4. (557 aa)
	PIBF1	Progesterone immunomodulatory binding factor 1. (757 aa)
	ECRG4	ECRG4 augurin precursor. (147 aa)
	M3YIE7_MUSPF	Uncharacterized protein. (409 aa)
	SERPINF1	Serpin family F member 1; Belongs to the serpin family. (418 aa)
	TAFA2	TAFA chemokine like family member 2. (131 aa)
	NAALADL2	N-acetylated alpha-linked acidic dipeptidase like 2. (802 aa)
	KBTBD12	Kelch repeat and BTB domain containing 12. (623 aa)
	SEMA3D	Semaphorin 3D; Belongs to the semaphorin family. (777 aa)
	FIGNL2	Fidgetin like 2. (665 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCO2	CPNE4	ENSMPUP00000003667	ENSMPUP00000009967	Beta-carotene oxygenase 2.	Copine 4.	0.515
BCO2	KBTBD12	ENSMPUP00000003667	ENSMPUP00000017233	Beta-carotene oxygenase 2.	Kelch repeat and BTB domain containing 12.	0.744
BCO2	M3Y8R1_MUSPF	ENSMPUP00000003667	ENSMPUP00000007718	Beta-carotene oxygenase 2.	Uncharacterized protein.	0.511
BCO2	NAALADL2	ENSMPUP00000003667	ENSMPUP00000017091	Beta-carotene oxygenase 2.	N-acetylated alpha-linked acidic dipeptidase like 2.	0.574
BCO2	PIBF1	ENSMPUP00000003667	ENSMPUP00000010164	Beta-carotene oxygenase 2.	Progesterone immunomodulatory binding factor 1.	0.735
BCO2	RFX3	ENSMPUP00000003667	ENSMPUP00000005063	Beta-carotene oxygenase 2.	Regulatory factor X3.	0.512
BCO2	SLC2A13	ENSMPUP00000003667	ENSMPUP00000000231	Beta-carotene oxygenase 2.	Solute carrier family 2 member 13; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.464
BCO2	TAFA2	ENSMPUP00000003667	ENSMPUP00000016606	Beta-carotene oxygenase 2.	TAFA chemokine like family member 2.	0.662
BCO2	TMEM117	ENSMPUP00000003667	ENSMPUP00000000363	Beta-carotene oxygenase 2.	Transmembrane protein 117.	0.526
BCO2	TMEM161B	ENSMPUP00000003667	ENSMPUP00000007916	Beta-carotene oxygenase 2.	Transmembrane protein 161B.	0.514
CPNE4	BCO2	ENSMPUP00000009967	ENSMPUP00000003667	Copine 4.	Beta-carotene oxygenase 2.	0.515
CPNE4	ECRG4	ENSMPUP00000009967	ENSMPUP00000010743	Copine 4.	ECRG4 augurin precursor.	0.511
CPNE4	FIGN	ENSMPUP00000009967	ENSMPUP00000000659	Copine 4.	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family.	0.477
CPNE4	FIGNL2	ENSMPUP00000009967	ENSMPUP00000018853	Copine 4.	Fidgetin like 2.	0.477
CPNE4	KBTBD12	ENSMPUP00000009967	ENSMPUP00000017233	Copine 4.	Kelch repeat and BTB domain containing 12.	0.639
CPNE4	M3Y8R1_MUSPF	ENSMPUP00000009967	ENSMPUP00000007718	Copine 4.	Uncharacterized protein.	0.410
CPNE4	NAALADL2	ENSMPUP00000009967	ENSMPUP00000017091	Copine 4.	N-acetylated alpha-linked acidic dipeptidase like 2.	0.568
CPNE4	SEMA3D	ENSMPUP00000009967	ENSMPUP00000018183	Copine 4.	Semaphorin 3D; Belongs to the semaphorin family.	0.513
CPNE4	SLC2A13	ENSMPUP00000009967	ENSMPUP00000000231	Copine 4.	Solute carrier family 2 member 13; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.656
CPNE4	TAFA2	ENSMPUP00000009967	ENSMPUP00000016606	Copine 4.	TAFA chemokine like family member 2.	0.530