(32 nodes) Mixed, incl. Neuronal dense core vesicle, and Recycling pathway of L1 network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101676297	Uncharacterized protein. (1513 aa)
	SLITRK4	SLIT and NTRK like family member 4. (995 aa)
	COL28A1	Collagen type XXVIII alpha 1 chain. (1148 aa)
	MARCHF1	Membrane associated ring-CH-type finger 1. (339 aa)
	STK32C	Serine/threonine kinase 32C. (368 aa)
	SLC35F3	Solute carrier family 35 member F3. (421 aa)
	M3Y3R5_MUSPF	Uncharacterized protein. (137 aa)
	SYT5	Synaptotagmin 5. (386 aa)
	M3YA21_MUSPF	WD_REPEATS_REGION domain-containing protein. (467 aa)
	PRDM15	PR/SET domain 15. (1022 aa)
	FBLN7	Fibulin 7. (383 aa)
	CDAN1	Codanin 1. (1143 aa)
	TMEM178A	Transmembrane protein 178A. (297 aa)
	HMCN1	Hemicentin 1. (5517 aa)
	MYPN	Myopalladin. (1320 aa)
	M3YLM3_MUSPF	V-SNARE coiled-coil homology domain-containing protein. (496 aa)
	M3YMN7_MUSPF	SET domain-containing protein. (116 aa)
	HMCN2	Hemicentin 2. (5541 aa)
	PSD3	Pleckstrin and Sec7 domain containing 3. (1281 aa)
	TMEM94	Transmembrane protein 94. (1336 aa)
	SPINK7	Serine peptidase inhibitor, Kazal type 7 (putative). (86 aa)
	TMEM97	Transmembrane protein 97. (188 aa)
	M3YV28_MUSPF	Uncharacterized protein. (457 aa)
	IFI30	IFI30 lysosomal thiol reductase. (252 aa)
	M3YYG5_MUSPF	NRF domain-containing protein. (686 aa)
	FNDC3A	Fibronectin type III domain containing 3A. (1198 aa)
	KIAA1324L	KIAA1324 like. (915 aa)
	ZNF804B	Zinc finger protein 804B. (1186 aa)
	OR6F1	Olfactory receptor. (317 aa)
	OR11L1	Olfactory receptor. (321 aa)
	ZNF329	Zinc finger protein 329. (521 aa)
	OR10A7	Olfactory receptor. (316 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDAN1	PRDM15	ENSMPUP00000009846	ENSMPUP00000008868	Codanin 1.	PR/SET domain 15.	0.562
CDAN1	PSD3	ENSMPUP00000009846	ENSMPUP00000012786	Codanin 1.	Pleckstrin and Sec7 domain containing 3.	0.433
COL28A1	KIAA1324L	ENSMPUP00000001470	ENSMPUP00000018186	Collagen type XXVIII alpha 1 chain.	KIAA1324 like.	0.602
COL28A1	M3Y3R5_MUSPF	ENSMPUP00000001470	ENSMPUP00000005966	Collagen type XXVIII alpha 1 chain.	Uncharacterized protein.	0.447
COL28A1	M3YA21_MUSPF	ENSMPUP00000001470	ENSMPUP00000008178	Collagen type XXVIII alpha 1 chain.	WD_REPEATS_REGION domain-containing protein.	0.447
COL28A1	M3YLM3_MUSPF	ENSMPUP00000001470	ENSMPUP00000012230	Collagen type XXVIII alpha 1 chain.	V-SNARE coiled-coil homology domain-containing protein.	0.447
COL28A1	PSD3	ENSMPUP00000001470	ENSMPUP00000012786	Collagen type XXVIII alpha 1 chain.	Pleckstrin and Sec7 domain containing 3.	0.458
COL28A1	SLC35F3	ENSMPUP00000001470	ENSMPUP00000002769	Collagen type XXVIII alpha 1 chain.	Solute carrier family 35 member F3.	0.429
COL28A1	ZNF804B	ENSMPUP00000001470	ENSMPUP00000018279	Collagen type XXVIII alpha 1 chain.	Zinc finger protein 804B.	0.429
FBLN7	FNDC3A	ENSMPUP00000009478	ENSMPUP00000017912	Fibulin 7.	Fibronectin type III domain containing 3A.	0.648
FBLN7	LOC101676297	ENSMPUP00000009478	ENSMPUP00000000079	Fibulin 7.	Uncharacterized protein.	0.648
FBLN7	TMEM178A	ENSMPUP00000009478	ENSMPUP00000010469	Fibulin 7.	Transmembrane protein 178A.	0.428
FBLN7	TMEM94	ENSMPUP00000009478	ENSMPUP00000013774	Fibulin 7.	Transmembrane protein 94.	0.490
FNDC3A	FBLN7	ENSMPUP00000017912	ENSMPUP00000009478	Fibronectin type III domain containing 3A.	Fibulin 7.	0.648
FNDC3A	M3YMN7_MUSPF	ENSMPUP00000017912	ENSMPUP00000012594	Fibronectin type III domain containing 3A.	SET domain-containing protein.	0.412
FNDC3A	MARCHF1	ENSMPUP00000017912	ENSMPUP00000001865	Fibronectin type III domain containing 3A.	Membrane associated ring-CH-type finger 1.	0.416
FNDC3A	OR6F1	ENSMPUP00000017912	ENSMPUP00000018606	Fibronectin type III domain containing 3A.	Olfactory receptor.	0.472
FNDC3A	PSD3	ENSMPUP00000017912	ENSMPUP00000012786	Fibronectin type III domain containing 3A.	Pleckstrin and Sec7 domain containing 3.	0.638
FNDC3A	TMEM178A	ENSMPUP00000017912	ENSMPUP00000010469	Fibronectin type III domain containing 3A.	Transmembrane protein 178A.	0.451
FNDC3A	TMEM94	ENSMPUP00000017912	ENSMPUP00000013774	Fibronectin type III domain containing 3A.	Transmembrane protein 94.	0.465