(16 nodes) Trophectodermal cell differentiation network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNOT3	CCR4-NOT transcription complex subunit 3. (752 aa)
	CITED2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2. (273 aa)
	JUNB	JunB proto-oncogene, AP-1 transcription factor subunit. (347 aa)
	ADA	Adenosine deaminase. (363 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (540 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (746 aa)
	SP3	Sp3 transcription factor. (695 aa)
	HAND1	Heart and neural crest derivatives expressed 1. (215 aa)
	BYSL	Bystin like. (437 aa)
	SRF	Serum response factor. (508 aa)
	CTR9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1173 aa)
	TEAD4	TEA domain transcription factor 4. (361 aa)
	YAP1	Yes associated protein 1. (325 aa)
	RBM46	RNA binding motif protein 46. (485 aa)
	CNOT1	CCR4-NOT transcription complex subunit 1. (2376 aa)
	NODAL	Nodal growth differentiation factor. (348 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT1	CNOT2	ENSMPUP00000004790	ENSMPUP00000017384	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 2.	0.999
CNOT1	CNOT3	ENSMPUP00000004790	ENSMPUP00000010278	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 3.	0.999
CNOT2	CNOT1	ENSMPUP00000017384	ENSMPUP00000004790	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 1.	0.999
CNOT2	CNOT3	ENSMPUP00000017384	ENSMPUP00000010278	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 3.	0.998
CNOT3	CNOT1	ENSMPUP00000010278	ENSMPUP00000004790	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 1.	0.999
CNOT3	CNOT2	ENSMPUP00000010278	ENSMPUP00000017384	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 2.	0.998
TEAD4	YAP1	ENSMPUP00000009302	ENSMPUP00000007150	TEA domain transcription factor 4.	Yes associated protein 1.	0.990
YAP1	TEAD4	ENSMPUP00000007150	ENSMPUP00000009302	Yes associated protein 1.	TEA domain transcription factor 4.	0.990