(6 nodes) DEAD/H-box RNA helicase binding network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAD1	Mothers against decapentaplegic homolog. (465 aa)
	SMAD5	Mothers against decapentaplegic homolog. (465 aa)
	DROSHA	Drosha ribonuclease III. (1374 aa)
	SMAD3	Mothers against decapentaplegic homolog. (414 aa)
	SP7	Sp7 transcription factor. (431 aa)
	POT1	Protection of telomeres 1. (785 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAD1	SMAD3	ENSMPUP00000006812	ENSMPUP00000000302	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.966
SMAD1	SMAD5	ENSMPUP00000006812	ENSMPUP00000009860	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.956
SMAD3	SMAD1	ENSMPUP00000000302	ENSMPUP00000006812	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.966
SMAD3	SMAD5	ENSMPUP00000000302	ENSMPUP00000009860	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.647
SMAD5	SMAD1	ENSMPUP00000009860	ENSMPUP00000006812	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.956
SMAD5	SMAD3	ENSMPUP00000009860	ENSMPUP00000000302	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.647