STRINGSTRING
PRKDC PRKDC BCL11B BCL11B M3XZP3_MUSPF M3XZP3_MUSPF ATM ATM TCF3 TCF3 XRCC4 XRCC4 RAG1 RAG1 LIG4 LIG4 NHEJ1 NHEJ1 RAG2 RAG2 M3YUJ9_MUSPF M3YUJ9_MUSPF POLB POLB DCAF1 DCAF1 TCF7 TCF7 LEF1 LEF1 M3XM17_MUSPF M3XM17_MUSPF DCLRE1C DCLRE1C
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4110 aa)
BCL11BBAF chromatin remodeling complex subunit BCL11B. (585 aa)
M3XZP3_MUSPFHMG box domain-containing protein. (215 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3057 aa)
TCF3Transcription factor 3. (652 aa)
XRCC4X-ray repair cross complementing 4. (506 aa)
RAG1V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] (1043 aa)
LIG4DNA ligase. (911 aa)
NHEJ1Non-homologous end joining factor 1. (299 aa)
RAG2Recombination activating 2. (527 aa)
M3YUJ9_MUSPFHMG box domain-containing protein. (171 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
DCAF1DDB1 and CUL4 associated factor 1. (1522 aa)
TCF7Transcription factor 7. (339 aa)
LEF1Lymphoid enhancer binding factor 1. (400 aa)
M3XM17_MUSPFUncharacterized protein. (208 aa)
DCLRE1CDNA cross-link repair 1C. (691 aa)
Your Current Organism:
Mustela putorius
NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret
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