(18 nodes) Kinetochore organization network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KNTC1	Kinetochore associated 1. (2207 aa)
	MIS12	MIS12 kinetochore complex component. (206 aa)
	M3YYD7_MUSPF	Uncharacterized protein. (221 aa)
	CENPK	Centromere protein K. (273 aa)
	CENPH	Centromere protein H. (247 aa)
	CENPW	Centromere protein W. (88 aa)
	CENPN	Centromere protein N. (338 aa)
	CENPE	Centromere protein E; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (2814 aa)
	CENPA	Centromere protein A. (166 aa)
	DLGAP5	DLG associated protein 5. (851 aa)
	CENPC	Centromere protein C. (947 aa)
	CENPT	Centromere protein T. (560 aa)
	SMC2	Structural maintenance of chromosomes protein. (1191 aa)
	M3Y8U7_MUSPF	CDT1 domain-containing protein. (347 aa)
	NDC80	NDC80 kinetochore complex component. (642 aa)
	NUF2	NUF2, NDC80 kinetochore complex component,-like protein. (464 aa)
	POGZ	Pogo transposable element derived with ZNF domain. (1414 aa)
	SMC4	Structural maintenance of chromosomes protein. (1288 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CENPA	CENPC	ENSMPUP00000008105	ENSMPUP00000001539	Centromere protein A.	Centromere protein C.	0.952
CENPA	CENPE	ENSMPUP00000008105	ENSMPUP00000009114	Centromere protein A.	Centromere protein E; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.840
CENPA	CENPH	ENSMPUP00000008105	ENSMPUP00000014537	Centromere protein A.	Centromere protein H.	0.842
CENPA	CENPK	ENSMPUP00000008105	ENSMPUP00000014664	Centromere protein A.	Centromere protein K.	0.926
CENPA	CENPN	ENSMPUP00000008105	ENSMPUP00000009487	Centromere protein A.	Centromere protein N.	0.970
CENPA	CENPT	ENSMPUP00000008105	ENSMPUP00000006589	Centromere protein A.	Centromere protein T.	0.979
CENPA	CENPW	ENSMPUP00000008105	ENSMPUP00000014489	Centromere protein A.	Centromere protein W.	0.923
CENPA	DLGAP5	ENSMPUP00000008105	ENSMPUP00000005720	Centromere protein A.	DLG associated protein 5.	0.868
CENPA	M3Y8U7_MUSPF	ENSMPUP00000008105	ENSMPUP00000007754	Centromere protein A.	CDT1 domain-containing protein.	0.400
CENPA	M3YYD7_MUSPF	ENSMPUP00000008105	ENSMPUP00000016347	Centromere protein A.	Uncharacterized protein.	0.826
CENPA	NDC80	ENSMPUP00000008105	ENSMPUP00000005317	Centromere protein A.	NDC80 kinetochore complex component.	0.853
CENPA	NUF2	ENSMPUP00000008105	ENSMPUP00000003735	Centromere protein A.	NUF2, NDC80 kinetochore complex component,-like protein.	0.816
CENPA	SMC2	ENSMPUP00000008105	ENSMPUP00000006943	Centromere protein A.	Structural maintenance of chromosomes protein.	0.468
CENPA	SMC4	ENSMPUP00000008105	ENSMPUP00000002898	Centromere protein A.	Structural maintenance of chromosomes protein.	0.426
CENPC	CENPA	ENSMPUP00000001539	ENSMPUP00000008105	Centromere protein C.	Centromere protein A.	0.952
CENPC	CENPE	ENSMPUP00000001539	ENSMPUP00000009114	Centromere protein C.	Centromere protein E; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.409
CENPC	CENPH	ENSMPUP00000001539	ENSMPUP00000014537	Centromere protein C.	Centromere protein H.	0.939
CENPC	CENPK	ENSMPUP00000001539	ENSMPUP00000014664	Centromere protein C.	Centromere protein K.	0.941
CENPC	CENPN	ENSMPUP00000001539	ENSMPUP00000009487	Centromere protein C.	Centromere protein N.	0.967
CENPC	CENPT	ENSMPUP00000001539	ENSMPUP00000006589	Centromere protein C.	Centromere protein T.	0.942