(11 nodes) CHD-type complex network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EML3	EMAP like 3. (897 aa)
	RBBP7	RB binding protein 7, chromatin remodeling factor. (469 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1996 aa)
	GATAD2B	GATA zinc finger domain containing 2B. (597 aa)
	MTA1	Metastasis associated 1. (633 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (1708 aa)
	M3YBU5_MUSPF	CHDNT domain-containing protein. (120 aa)
	MTA3	Metastasis associated 1 family member 3. (621 aa)
	MTA2	Metastasis associated 1 family member 2. (622 aa)
	GATAD2A	GATA zinc finger domain containing 2A. (639 aa)
	CHD4	Uncharacterized protein. (1912 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHD3	CHD4	ENSMPUP00000008791	ENSMPUP00000016754	Chromodomain helicase DNA binding protein 3.	Uncharacterized protein.	0.864
CHD3	GATAD2A	ENSMPUP00000008791	ENSMPUP00000015289	Chromodomain helicase DNA binding protein 3.	GATA zinc finger domain containing 2A.	0.914
CHD3	GATAD2B	ENSMPUP00000008791	ENSMPUP00000008077	Chromodomain helicase DNA binding protein 3.	GATA zinc finger domain containing 2B.	0.860
CHD3	M3YBU5_MUSPF	ENSMPUP00000008791	ENSMPUP00000008802	Chromodomain helicase DNA binding protein 3.	CHDNT domain-containing protein.	0.878
CHD3	MTA1	ENSMPUP00000008791	ENSMPUP00000008098	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1.	0.832
CHD3	MTA2	ENSMPUP00000008791	ENSMPUP00000013780	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family member 2.	0.870
CHD3	MTA3	ENSMPUP00000008791	ENSMPUP00000008823	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family member 3.	0.840
CHD3	RBBP7	ENSMPUP00000008791	ENSMPUP00000002789	Chromodomain helicase DNA binding protein 3.	RB binding protein 7, chromatin remodeling factor.	0.881
CHD4	CHD3	ENSMPUP00000016754	ENSMPUP00000008791	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.864
CHD4	GATAD2A	ENSMPUP00000016754	ENSMPUP00000015289	Uncharacterized protein.	GATA zinc finger domain containing 2A.	0.979
CHD4	GATAD2B	ENSMPUP00000016754	ENSMPUP00000008077	Uncharacterized protein.	GATA zinc finger domain containing 2B.	0.959
CHD4	M3YBU5_MUSPF	ENSMPUP00000016754	ENSMPUP00000008802	Uncharacterized protein.	CHDNT domain-containing protein.	0.792
CHD4	MTA1	ENSMPUP00000016754	ENSMPUP00000008098	Uncharacterized protein.	Metastasis associated 1.	0.945
CHD4	MTA2	ENSMPUP00000016754	ENSMPUP00000013780	Uncharacterized protein.	Metastasis associated 1 family member 2.	0.980
CHD4	MTA3	ENSMPUP00000016754	ENSMPUP00000008823	Uncharacterized protein.	Metastasis associated 1 family member 3.	0.926
CHD4	RBBP7	ENSMPUP00000016754	ENSMPUP00000002789	Uncharacterized protein.	RB binding protein 7, chromatin remodeling factor.	0.933
CHD5	GATAD2A	ENSMPUP00000007065	ENSMPUP00000015289	Chromodomain helicase DNA binding protein 5.	GATA zinc finger domain containing 2A.	0.752
CHD5	GATAD2B	ENSMPUP00000007065	ENSMPUP00000008077	Chromodomain helicase DNA binding protein 5.	GATA zinc finger domain containing 2B.	0.771
CHD5	MTA1	ENSMPUP00000007065	ENSMPUP00000008098	Chromodomain helicase DNA binding protein 5.	Metastasis associated 1.	0.605
CHD5	MTA2	ENSMPUP00000007065	ENSMPUP00000013780	Chromodomain helicase DNA binding protein 5.	Metastasis associated 1 family member 2.	0.634