(43 nodes) RNA Polymerase III Transcription network (Mustela putorius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GTF3C6	TFIIIC_sub6 domain-containing protein. (217 aa)
	BRF2	BRF2 RNA polymerase III transcription initiation factor subunit. (421 aa)
	GTF3C2	General transcription factor IIIC subunit 2. (906 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (562 aa)
	SNAPC2	Small nuclear RNA activating complex polypeptide 2. (337 aa)
	M3Y940_MUSPF	Uncharacterized protein. (219 aa)
	GTF3C3	General transcription factor IIIC subunit 3. (883 aa)
	M3Y8H9_MUSPF	Uncharacterized protein. (93 aa)
	NFIA	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (554 aa)
	TBP	TATA-box binding protein. (323 aa)
	SNAPC1	Small nuclear RNA activating complex polypeptide 1. (378 aa)
	GTF3A	General transcription factor IIIA. (369 aa)
	TBPL2	TATA-box binding protein like 2. (350 aa)
	CRCP	CGRP receptor component. (145 aa)
	POU2F1	POU domain protein. (751 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	BDP1	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB. (2605 aa)
	POLR2F	RNA polymerase II subunit F. (127 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (2158 aa)
	M3YNB9_MUSPF	Uncharacterized protein. (80 aa)
	POLR1C	RNA polymerase I and III subunit C. (380 aa)
	ZNF143	Zinc finger protein 143. (594 aa)
	POLR3E	RNA polymerase III subunit E. (714 aa)
	M3Z629_MUSPF	TFIIIC_sub6 domain-containing protein. (209 aa)
	GTF3C4	General transcription factor IIIC subunit 4. (817 aa)
	GTF3C5	General transcription factor IIIC subunit 5. (471 aa)
	NFIX	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (440 aa)
	NFIB	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (570 aa)
	SNAPC3	Small nuclear RNA activating complex polypeptide 3. (455 aa)
	NFIC	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (515 aa)
	POLR3A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
	POLR3D	RNA polymerase III subunit D. (398 aa)
	ZNF76	Zinc finger protein 76. (570 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	M3XQ91_MUSPF	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (322 aa)
	POLR3GL	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (218 aa)
	SSB	Small RNA binding exonuclease protection factor La. (405 aa)
	POLR3C	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (534 aa)
	SNAPC5	Small nuclear RNA activating complex polypeptide 5. (99 aa)
	POLR3B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1133 aa)
	SNAPC4	Small nuclear RNA activating complex polypeptide 4. (1427 aa)
	POLR3H	RNA polymerase III subunit H. (204 aa)

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	BRF1	ENSMPUP00000014317	ENSMPUP00000008124	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.986
BDP1	BRF2	ENSMPUP00000014317	ENSMPUP00000009931	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.978
BDP1	CRCP	ENSMPUP00000014317	ENSMPUP00000016094	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	CGRP receptor component.	0.852
BDP1	GTF3A	ENSMPUP00000014317	ENSMPUP00000005787	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIA.	0.555
BDP1	GTF3C1	ENSMPUP00000014317	ENSMPUP00000012839	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 1.	0.685
BDP1	GTF3C2	ENSMPUP00000014317	ENSMPUP00000009580	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 2.	0.484
BDP1	GTF3C3	ENSMPUP00000014317	ENSMPUP00000007707	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 3.	0.857
BDP1	GTF3C4	ENSMPUP00000014317	ENSMPUP00000012425	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 4.	0.496
BDP1	GTF3C5	ENSMPUP00000014317	ENSMPUP00000012365	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 5.	0.710
BDP1	M3XQ91_MUSPF	ENSMPUP00000014317	ENSMPUP00000001241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.826
BDP1	M3Y8H9_MUSPF	ENSMPUP00000014317	ENSMPUP00000007636	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Uncharacterized protein.	0.825
BDP1	M3Y940_MUSPF	ENSMPUP00000014317	ENSMPUP00000007847	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Uncharacterized protein.	0.714
BDP1	POLR1C	ENSMPUP00000014317	ENSMPUP00000012817	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase I and III subunit C.	0.822
BDP1	POLR2E	ENSMPUP00000014317	ENSMPUP00000008883	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit E.	0.771
BDP1	POLR2F	ENSMPUP00000014317	ENSMPUP00000012898	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase II subunit F.	0.798
BDP1	POLR2H	ENSMPUP00000014317	ENSMPUP00000002823	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.799
BDP1	POLR3A	ENSMPUP00000014317	ENSMPUP00000003760	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.922
BDP1	POLR3B	ENSMPUP00000014317	ENSMPUP00000012043	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.908
BDP1	POLR3C	ENSMPUP00000014317	ENSMPUP00000000651	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.856
BDP1	POLR3D	ENSMPUP00000014317	ENSMPUP00000003624	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	RNA polymerase III subunit D.	0.858