(6 nodes) Post-chaperonin tubulin folding pathway network (Felis catus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBCEL	Ubiquitin-like domain-containing protein. (424 aa)
	TBCD	Tubulin folding cofactor D. (1189 aa)
	TBCC	Tubulin folding cofactor C. (344 aa)
	TBCB	Tubulin folding cofactor B. (244 aa)
	TBCA	Tubulin-specific chaperone A; Belongs to the TBCA family. (108 aa)
	TBCE	Uncharacterized protein. (547 aa)

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TBCA	TBCB	ENSFCAP00000030771	ENSFCAP00000022787	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor B.	0.671
TBCA	TBCC	ENSFCAP00000030771	ENSFCAP00000022314	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor C.	0.787
TBCA	TBCD	ENSFCAP00000030771	ENSFCAP00000013005	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor D.	0.728
TBCA	TBCE	ENSFCAP00000030771	ENSFCAP00000057877	Tubulin-specific chaperone A; Belongs to the TBCA family.	Uncharacterized protein.	0.848
TBCA	TBCEL	ENSFCAP00000030771	ENSFCAP00000012509	Tubulin-specific chaperone A; Belongs to the TBCA family.	Ubiquitin-like domain-containing protein.	0.795
TBCB	TBCA	ENSFCAP00000022787	ENSFCAP00000030771	Tubulin folding cofactor B.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.671
TBCB	TBCC	ENSFCAP00000022787	ENSFCAP00000022314	Tubulin folding cofactor B.	Tubulin folding cofactor C.	0.792
TBCB	TBCD	ENSFCAP00000022787	ENSFCAP00000013005	Tubulin folding cofactor B.	Tubulin folding cofactor D.	0.909
TBCB	TBCE	ENSFCAP00000022787	ENSFCAP00000057877	Tubulin folding cofactor B.	Uncharacterized protein.	0.819
TBCB	TBCEL	ENSFCAP00000022787	ENSFCAP00000012509	Tubulin folding cofactor B.	Ubiquitin-like domain-containing protein.	0.808
TBCC	TBCA	ENSFCAP00000022314	ENSFCAP00000030771	Tubulin folding cofactor C.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.787
TBCC	TBCB	ENSFCAP00000022314	ENSFCAP00000022787	Tubulin folding cofactor C.	Tubulin folding cofactor B.	0.792
TBCC	TBCD	ENSFCAP00000022314	ENSFCAP00000013005	Tubulin folding cofactor C.	Tubulin folding cofactor D.	0.865
TBCC	TBCE	ENSFCAP00000022314	ENSFCAP00000057877	Tubulin folding cofactor C.	Uncharacterized protein.	0.616
TBCC	TBCEL	ENSFCAP00000022314	ENSFCAP00000012509	Tubulin folding cofactor C.	Ubiquitin-like domain-containing protein.	0.902
TBCD	TBCA	ENSFCAP00000013005	ENSFCAP00000030771	Tubulin folding cofactor D.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.728
TBCD	TBCB	ENSFCAP00000013005	ENSFCAP00000022787	Tubulin folding cofactor D.	Tubulin folding cofactor B.	0.909
TBCD	TBCC	ENSFCAP00000013005	ENSFCAP00000022314	Tubulin folding cofactor D.	Tubulin folding cofactor C.	0.865
TBCD	TBCE	ENSFCAP00000013005	ENSFCAP00000057877	Tubulin folding cofactor D.	Uncharacterized protein.	0.969
TBCD	TBCEL	ENSFCAP00000013005	ENSFCAP00000012509	Tubulin folding cofactor D.	Ubiquitin-like domain-containing protein.	0.829