(22 nodes) Lysine-acetylated histone binding network (Panthera pardus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZZZ3	ZZ-type zinc finger-containing protein 3 isoform X1. (903 aa)
	BRD7	Bromodomain-containing protein 7 isoform X1. (651 aa)
	TRIM24	Transcription intermediary factor 1-alpha isoform X1. (1050 aa)
	BRDT	Bromodomain testis-specific protein isoform X1. (948 aa)
	THAP7	THAP domain-containing protein 7 isoform X1. (313 aa)
	BRD3	Bromodomain-containing protein 3 isoform X1. (727 aa)
	BRD9	Bromodomain containing 9. (598 aa)
	ENSPPRP00000007652	annotation not available (142 aa)
	BRD2	Bromodomain-containing protein 2 isoform X1. (804 aa)
	ENSPPRP00000010739	annotation not available (136 aa)
	ZMYND8	Protein kinase C-binding protein 1 isoform X1. (1222 aa)
	PSME4	Proteasome activator complex subunit 4. (1843 aa)
	BRD4	Bromodomain-containing protein 4. (722 aa)
	NANOG	Homeobox protein NANOG. (301 aa)
	ENSPPRP00000019908	annotation not available (211 aa)
	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X1. (2956 aa)
	PHIP	PH-interacting protein isoform X1. (1821 aa)
	DPF2	Zinc finger protein ubi-d4 isoform X1. (405 aa)
	YEATS4	YEATS domain-containing protein 4 isoform X1. (227 aa)
	BRWD3	Bromodomain and WD repeat-containing protein 3 isoform X1. (1801 aa)
	ENSPPRP00000028268	annotation not available (311 aa)
	ATAD2B	ATPase family AAA domain-containing protein 2B. (1458 aa)

Your Current Organism:

Panthera pardus

NCBI taxonomy Id: 9691
Other names: Leo pardus, P. pardus, leopard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATAD2B	BRD9	ENSPPRP00000029470	ENSPPRP00000006615	ATPase family AAA domain-containing protein 2B.	Bromodomain containing 9.	0.461
ATAD2B	BRWD3	ENSPPRP00000029470	ENSPPRP00000027911	ATPase family AAA domain-containing protein 2B.	Bromodomain and WD repeat-containing protein 3 isoform X1.	0.471
ATAD2B	PHIP	ENSPPRP00000029470	ENSPPRP00000024269	ATPase family AAA domain-containing protein 2B.	PH-interacting protein isoform X1.	0.707
ATAD2B	TRIM24	ENSPPRP00000029470	ENSPPRP00000001008	ATPase family AAA domain-containing protein 2B.	Transcription intermediary factor 1-alpha isoform X1.	0.419
BRD2	BRD3	ENSPPRP00000008083	ENSPPRP00000006407	Bromodomain-containing protein 2 isoform X1.	Bromodomain-containing protein 3 isoform X1.	0.718
BRD2	BRD4	ENSPPRP00000008083	ENSPPRP00000019665	Bromodomain-containing protein 2 isoform X1.	Bromodomain-containing protein 4.	0.593
BRD2	BRDT	ENSPPRP00000008083	ENSPPRP00000001389	Bromodomain-containing protein 2 isoform X1.	Bromodomain testis-specific protein isoform X1.	0.666
BRD2	ENSPPRP00000019908	ENSPPRP00000008083	ENSPPRP00000019908	Bromodomain-containing protein 2 isoform X1.	annotation not available	0.938
BRD2	YEATS4	ENSPPRP00000008083	ENSPPRP00000026188	Bromodomain-containing protein 2 isoform X1.	YEATS domain-containing protein 4 isoform X1.	0.405
BRD3	BRD2	ENSPPRP00000006407	ENSPPRP00000008083	Bromodomain-containing protein 3 isoform X1.	Bromodomain-containing protein 2 isoform X1.	0.718
BRD3	BRD4	ENSPPRP00000006407	ENSPPRP00000019665	Bromodomain-containing protein 3 isoform X1.	Bromodomain-containing protein 4.	0.715
BRD3	BRDT	ENSPPRP00000006407	ENSPPRP00000001389	Bromodomain-containing protein 3 isoform X1.	Bromodomain testis-specific protein isoform X1.	0.769
BRD3	ENSPPRP00000007652	ENSPPRP00000006407	ENSPPRP00000007652	Bromodomain-containing protein 3 isoform X1.	annotation not available	0.720
BRD3	ENSPPRP00000019908	ENSPPRP00000006407	ENSPPRP00000019908	Bromodomain-containing protein 3 isoform X1.	annotation not available	0.958
BRD3	YEATS4	ENSPPRP00000006407	ENSPPRP00000026188	Bromodomain-containing protein 3 isoform X1.	YEATS domain-containing protein 4 isoform X1.	0.405
BRD4	BRD2	ENSPPRP00000019665	ENSPPRP00000008083	Bromodomain-containing protein 4.	Bromodomain-containing protein 2 isoform X1.	0.593
BRD4	BRD3	ENSPPRP00000019665	ENSPPRP00000006407	Bromodomain-containing protein 4.	Bromodomain-containing protein 3 isoform X1.	0.715
BRD4	BRD9	ENSPPRP00000019665	ENSPPRP00000006615	Bromodomain-containing protein 4.	Bromodomain containing 9.	0.513
BRD4	BRDT	ENSPPRP00000019665	ENSPPRP00000001389	Bromodomain-containing protein 4.	Bromodomain testis-specific protein isoform X1.	0.658
BRD4	ENSPPRP00000007652	ENSPPRP00000019665	ENSPPRP00000007652	Bromodomain-containing protein 4.	annotation not available	0.586