STRINGSTRING
LRRC51 LRRC51 WDR53 WDR53 SMU1 SMU1 LOC101374449 LOC101374449 SF3B3 SF3B3 TXNL4B TXNL4B SDE2 SDE2 PPIL3 PPIL3 SF3B1 SF3B1 SART1 SART1 BUD31 BUD31 PLRG1 PLRG1 LSM1 LSM1 SYF2 SYF2 SF3B6 SF3B6 CWC25 CWC25 CCDC94 CCDC94 LSM7 LSM7 SF3A2 SF3A2 CACTIN CACTIN WDR25 WDR25 LSM3 LSM3 ISY1 ISY1 SNRPA SNRPA LOC101369390 LOC101369390 RBM42 RBM42 GPKOW GPKOW DHX9 DHX9 PPIG PPIG PRPF4 PRPF4 LOC101375442 LOC101375442 SF3B5 SF3B5 PHF5A PHF5A DHX40 DHX40 ZMAT2 ZMAT2 IK IK SNRPB SNRPB LOC101373629 LOC101373629 SNRNP27 SNRNP27 SNRPG SNRPG UBL5 UBL5 DDX39A DDX39A PRKRIP1 PRKRIP1 SRRM3 SRRM3 CCDC12 CCDC12 SNW1 SNW1 NSRP1 NSRP1 SNRNP200 SNRNP200 SF3A1 SF3A1 SNRPF SNRPF PPIL2 PPIL2 DDX23 DDX23 DHX34 DHX34 SNRPD2 SNRPD2 BCAS2 BCAS2 TCERG1L TCERG1L PPWD1 PPWD1 CWC27 CWC27 LOC101375942 LOC101375942 SNIP1 SNIP1 LSM10 LSM10 PPIE PPIE RBM22 RBM22 CWC22 CWC22 WDR70 WDR70 PPIL4 PPIL4 SF3B4 SF3B4 DHX32 DHX32 FAM32A FAM32A LSM4 LSM4 SLU7 SLU7 NKAP NKAP RNF113A RNF113A SNRPA1 SNRPA1 SNRNP40 SNRNP40 PPIH PPIH CDC40 CDC40 WBP11 WBP11 LOC101377041 LOC101377041 DHX8 DHX8 LSM8 LSM8 AQR AQR DHX16 DHX16 PRPF18 PRPF18 PPIL1 PPIL1 PRPF19 PRPF19 PRPF6 PRPF6 SNRPD1 SNRPD1 MFAP1 MFAP1 LSM6 LSM6 XAB2 XAB2 CWC15 CWC15 LOC101376578 LOC101376578 RBM41 RBM41 LSM5 LSM5 SNRNP70 SNRNP70 LSM2 LSM2 DHX35 DHX35 USP39 USP39 BUD13 BUD13 SNRPN SNRPN LOC101380375 LOC101380375 SNRPB2 SNRPB2 CDC5L CDC5L TXNL4A TXNL4A NKAPL NKAPL LOC101380875 LOC101380875 DAW1 DAW1 LOC101372568 LOC101372568 SRRM1 SRRM1 LOC101376975 LOC101376975 PQBP1 PQBP1 DQX1 DQX1 RBMX2 RBMX2 PRPF38A PRPF38A SNRPD3 SNRPD3 CWF19L2 CWF19L2 LOC101379623 LOC101379623 HFM1 HFM1 SF3A3 SF3A3 SRRM2 SRRM2 PRPF8 PRPF8 PRPF3 PRPF3 DDX46 DDX46 DDX5 DDX5 SNRPE SNRPE WBP4 WBP4 DDX42 DDX42 EFTUD2 EFTUD2 SNRPC SNRPC CTNNBL1 CTNNBL1 DHX38 DHX38 PRPF31 PRPF31 CRNKL1 CRNKL1 TCERG1 TCERG1 SF3B2 SF3B2 LOC101376302 LOC101376302 LOC101377293 LOC101377293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LRRC51Leucine rich repeat containing 51 isoform X1. (192 aa)
WDR53WD repeat-containing protein 53. (357 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
LOC101374449Uncharacterized protein C9orf78 homolog isoform X1. (289 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
SDE2Protein SDE2 homolog. (480 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1304 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1 isoform X1. (806 aa)
BUD31Protein BUD31 homolog. (144 aa)
PLRG1Pleiotropic regulator 1 isoform X1. (515 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
SYF2pre-mRNA-splicing factor SYF2. (246 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
CWC25pre-mRNA-splicing factor CWC25 homolog. (425 aa)
CCDC94Coiled-coil domain-containing protein 94. (324 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (103 aa)
SF3A2Splicing factor 3A subunit 2. (471 aa)
CACTINCactin. (750 aa)
WDR25WD repeat-containing protein 25. (539 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (285 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (282 aa)
LOC101369390UPF0692 protein C19orf54 homolog. (348 aa)
RBM42RNA-binding protein 42 isoform X1. (477 aa)
GPKOWG patch domain and KOW motifs-containing protein isoform X1. (481 aa)
DHX9ATP-dependent RNA helicase A isoform X1. (1277 aa)
PPIGPeptidyl-prolyl cis-trans isomerase G isoform X1. (753 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
LOC101375442Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
PHF5APHD finger-like domain-containing protein 5A. (110 aa)
DHX40Probable ATP-dependent RNA helicase DHX40 isoform X1. (779 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
IKProtein Red. (563 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LOC101373629Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (123 aa)
SNRNP27U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (155 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
UBL5Ubiquitin-like protein 5. (73 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
PRKRIP1PRKR-interacting protein 1. (185 aa)
SRRM3Serine/arginine repetitive matrix protein 3. (593 aa)
CCDC12Coiled-coil domain-containing protein 12. (166 aa)
SNW1SNW domain-containing protein 1 isoform X1. (536 aa)
NSRP1Nuclear speckle splicing regulatory protein 1 isoform X1. (568 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
PPIL2Peptidyl-prolyl cis-trans isomerase-like 2 isoform X1. (522 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (820 aa)
DHX34Probable ATP-dependent RNA helicase DHX34. (1139 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
BCAS2pre-mRNA-splicing factor SPF27. (225 aa)
TCERG1LTranscription elongation regulator 1-like protein. (584 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1. (646 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (472 aa)
LOC101375942RING finger protein 113A-like. (344 aa)
SNIP1Smad nuclear-interacting protein 1. (397 aa)
LSM10U7 snRNA-associated Sm-like protein LSm10. (123 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
RBM22pre-mRNA-splicing factor RBM22. (419 aa)
CWC22pre-mRNA-splicing factor CWC22 homolog isoform X1. (908 aa)
WDR70WD repeat-containing protein 70 isoform X1. (654 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (492 aa)
SF3B4Splicing factor 3B subunit 4. (424 aa)
DHX32Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (745 aa)
FAM32AProtein FAM32A. (112 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
SLU7pre-mRNA-splicing factor SLU7. (633 aa)
NKAPNF-kappa-B-activating protein. (418 aa)
RNF113ARING finger protein 113A. (344 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
CDC40pre-mRNA-processing factor 17. (579 aa)
WBP11WW domain-binding protein 11. (641 aa)
LOC101377041Leucine-rich repeat-containing protein C10orf11 homolog. (172 aa)
DHX8ATP-dependent RNA helicase DHX8. (1220 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1491 aa)
DHX16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1043 aa)
PRPF18pre-mRNA-splicing factor 18. (342 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
PRPF19pre-mRNA-processing factor 19. (504 aa)
PRPF6pre-mRNA-processing factor 6 isoform X1. (941 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
LSM6U6 snRNA-associated Sm-like protein LSm6. (80 aa)
XAB2pre-mRNA-splicing factor SYF1. (855 aa)
CWC15Spliceosome-associated protein CWC15 homolog. (231 aa)
LOC101376578Small nuclear ribonucleoprotein F-like. (86 aa)
RBM41RNA-binding protein 41. (269 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa isoform X1. (438 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
DHX35Probable ATP-dependent RNA helicase DHX35 isoform X1. (708 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (565 aa)
BUD13BUD13 homolog. (490 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LOC101380375Dynein assembly factor with WDR repeat domains 1. (219 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'' isoform X1. (225 aa)
CDC5LCell division cycle 5-like protein isoform X1. (802 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
NKAPLNKAP-like protein. (397 aa)
LOC101380875Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
DAW1Dynein assembly factor with WDR repeat domains 1. (362 aa)
LOC101372568RNA-binding protein 41. (228 aa)
SRRM1Serine/arginine repetitive matrix protein 1. (783 aa)
LOC101376975pre-mRNA-splicing factor SYF2-like. (265 aa)
PQBP1Polyglutamine-binding protein 1 isoform X1. (265 aa)
DQX1ATP-dependent RNA helicase DQX1. (719 aa)
RBMX2RNA-binding motif protein, X-linked 2. (296 aa)
PRPF38Apre-mRNA-splicing factor 38A isoform X1. (319 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
CWF19L2CWF19-like protein 2. (1062 aa)
LOC101379623LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked 2-like. (322 aa)
HFM1Probable ATP-dependent DNA helicase HFM1 isoform X1. (1480 aa)
SF3A3Splicing factor 3A subunit 3 isoform X1. (583 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (195 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (683 aa)
DDX46Probable ATP-dependent RNA helicase DDX46 isoform X1. (1032 aa)
DDX5Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family. (614 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (94 aa)
WBP4WW domain-binding protein 4 isoform X1. (392 aa)
DDX42ATP-dependent RNA helicase DDX42. (934 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
SNRPCU1 small nuclear ribonucleoprotein C isoform X1. (171 aa)
CTNNBL1Beta-catenin-like protein 1 isoform X1. (569 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1239 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1. (499 aa)
CRNKL1LOW QUALITY PROTEIN: crooked neck-like protein 1. (829 aa)
TCERG1Transcription elongation regulator 1 isoform X1. (1103 aa)
SF3B2Splicing factor 3B subunit 2 isoform X1. (896 aa)
LOC101376302LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like. (911 aa)
LOC101377293LOW QUALITY PROTEIN: CWF19-like protein 2. (896 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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