(93 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Odobenus rosmarus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL24	60S ribosomal protein L24 isoform X1. (157 aa)
	RPS3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (243 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	LOC101380833	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (288 aa)
	FAU	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	LOC101365859	60S ribosomal protein L34-like. (117 aa)
	RPL27A	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	RPL11	60S ribosomal protein L11 isoform X1; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	RPL23	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	RPL36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	RPS15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	LOC101381526	60S ribosomal protein L31-like. (126 aa)
	LOC101379001	60S ribosomal protein L4 isoform X1. (420 aa)
	RPL9	60S ribosomal protein L9. (192 aa)
	RPS16	40S ribosomal protein S16 isoform X1; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	RPLP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	LOC101369423	60S ribosomal protein L35a isoform X2. (110 aa)
	RPS8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	RPL8	60S ribosomal protein L8. (257 aa)
	RPL37A	Putative 60S ribosomal protein L37a. (92 aa)
	RPS12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	LOC101382326	40S ribosomal protein S20. (119 aa)
	RPL38	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	RPS3A	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3. (264 aa)
	RPL31	60S ribosomal protein L31. (125 aa)
	LOC101363426	60S ribosomal protein L3 isoform X1; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	RPS14	40S ribosomal protein S14 isoform X1; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPS2	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (293 aa)
	LOC101374703	40S ribosomal protein S2-like; Belongs to the universal ribosomal protein uS5 family. (291 aa)
	RPS27A	ubiquitin-40S ribosomal protein S27a. (156 aa)
	RPL7	LOW QUALITY PROTEIN: 60S ribosomal protein L7. (319 aa)
	RPL18A	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	RPS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	RPL39	60S ribosomal protein L39. (54 aa)
	RPS23	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	LOC101385100	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (156 aa)
	RPS6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	RPS5	40S ribosomal protein S5 isoform X1; Belongs to the universal ribosomal protein uS7 family. (242 aa)
	LOC101364517	40S ribosomal protein S11-like; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	LOC101382738	60S ribosomal protein L26-like. (145 aa)
	RPS18	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	RPS10	40S ribosomal protein S10. (165 aa)
	RPS19	40S ribosomal protein S19. (145 aa)
	RPL37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	RPS28	40S ribosomal protein S28. (69 aa)
	RPS9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	LOC101374531	40S ribosomal protein S18-like; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	RPS11	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	RPL13A	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	LOC101363157	60S ribosomal protein L11-like; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	RPS21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	RPS15A	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	ARL6IP1	ADP-ribosylation factor-like protein 6-interacting protein 1. (203 aa)
	RPL17	60S ribosomal protein L17 isoform X1; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	RPL27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	RPL22	60S ribosomal protein L22. (128 aa)
	RPL34	60S ribosomal protein L34. (117 aa)
	LOC101375315	60S ribosomal protein L32. (135 aa)
	RPL7A	60S ribosomal protein L7a. (266 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (159 aa)
	RPL14	60S ribosomal protein L14. (210 aa)
	RPS25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (125 aa)
	RPS4X	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	RPL18	60S ribosomal protein L18. (188 aa)
	RPS13	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	RPL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	LOC101379413	60S ribosomal protein L32-like. (203 aa)
	LOC101370469	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3. (264 aa)
	LOC101374252	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	LOC105757262	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (131 aa)
	RPL3	LOW QUALITY PROTEIN: 60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (456 aa)
	LOC101374633	Uncharacterized protein LOC101374633. (291 aa)
	LOC105757471	LOW QUALITY PROTEIN: 50S ribosomal protein L2, plastid-like. (310 aa)
	LOC101372779	LOW QUALITY PROTEIN: ribosomal protein L18-like. (188 aa)
	RPL35	60S ribosomal protein L35. (124 aa)
	RPL5	60S ribosomal protein L5 isoform X1. (297 aa)
	LOC101367660	LOW QUALITY PROTEIN: formin-like protein 3; Belongs to the universal ribosomal protein uL15 family. (453 aa)
	LOC101373823	LOW QUALITY PROTEIN: uncharacterized protein LOC101373823. (661 aa)
	UBA52	ubiquitin-60S ribosomal protein L40 isoform X1. (183 aa)
	RPL28	60S ribosomal protein L28. (137 aa)
	LOC101386301	LOW QUALITY PROTEIN: 40S ribosomal protein S3-like. (378 aa)
	LOC105757802	60S ribosomal protein L35a-like. (159 aa)
	LOC105757850	40S ribosomal protein S29. (56 aa)
	LOC105757892	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (175 aa)
	LOC101369848	40S ribosomal protein S2-like; Belongs to the universal ribosomal protein uS5 family. (287 aa)
	RPL6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (249 aa)
	LOC101366413	40S ribosomal protein S20-like. (91 aa)
	LOC105758044	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (155 aa)
	LOC101372640	Putative 60S ribosomal protein L37a. (92 aa)
	RPL21	60S ribosomal protein L21. (160 aa)
	LOC101365175	60S ribosomal protein L6-like. (203 aa)
	LOC101379791	LOW QUALITY PROTEIN: 60S ribosomal protein L35-like. (122 aa)

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6IP1	FAU	A0A2U3WN19	A0A2U3VHA3	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
ARL6IP1	LOC101363157	A0A2U3WN19	A0A2U3WM90	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L11-like; Belongs to the universal ribosomal protein uL5 family.	0.917
ARL6IP1	LOC101363426	A0A2U3WN19	A0A2U3W3Z4	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L3 isoform X1; Belongs to the universal ribosomal protein uL3 family.	0.884
ARL6IP1	LOC101364517	A0A2U3WN19	A0A2U3WCX9	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S11-like; Belongs to the universal ribosomal protein uS17 family.	0.955
ARL6IP1	LOC101365175	A0A2U3WN19	A0A2U3ZWN0	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L6-like.	0.872
ARL6IP1	LOC101365859	A0A2U3WN19	A0A2U3VI81	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L34-like.	0.870
ARL6IP1	LOC101366413	A0A2U3WN19	A0A2U3ZRH7	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S20-like.	0.953
ARL6IP1	LOC101367660	A0A2U3WN19	A0A2U3ZIG0	ADP-ribosylation factor-like protein 6-interacting protein 1.	LOW QUALITY PROTEIN: formin-like protein 3; Belongs to the universal ribosomal protein uL15 family.	0.873
ARL6IP1	LOC101369423	A0A2U3WN19	A0A2U3VYJ4	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L35a isoform X2.	0.858
ARL6IP1	LOC101369848	A0A2U3WN19	A0A2U3ZPN3	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S2-like; Belongs to the universal ribosomal protein uS5 family.	0.923
ARL6IP1	LOC101370469	A0A2U3WN19	A0A2U3Z9Q0	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3.	0.952
ARL6IP1	LOC101372640	A0A2U3WN19	A0A2U3ZV57	ADP-ribosylation factor-like protein 6-interacting protein 1.	Putative 60S ribosomal protein L37a.	0.819
ARL6IP1	LOC101372779	A0A2U3WN19	A0A2U3ZHG7	ADP-ribosylation factor-like protein 6-interacting protein 1.	LOW QUALITY PROTEIN: ribosomal protein L18-like.	0.897
ARL6IP1	LOC101373823	A0A2U3WN19	A0A2U3ZIN2	ADP-ribosylation factor-like protein 6-interacting protein 1.	LOW QUALITY PROTEIN: uncharacterized protein LOC101373823.	0.914
ARL6IP1	LOC101374252	A0A2U3WN19	A0A2U3ZBH1	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.947
ARL6IP1	LOC101374531	A0A2U3WN19	A0A2U3WLR2	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S18-like; Belongs to the universal ribosomal protein uS13 family.	0.940
ARL6IP1	LOC101374633	A0A2U3WN19	A0A2U3ZE96	ADP-ribosylation factor-like protein 6-interacting protein 1.	Uncharacterized protein LOC101374633.	0.870
ARL6IP1	LOC101374703	A0A2U3WN19	A0A2U3W6A7	ADP-ribosylation factor-like protein 6-interacting protein 1.	40S ribosomal protein S2-like; Belongs to the universal ribosomal protein uS5 family.	0.923
ARL6IP1	LOC101375315	A0A2U3WN19	A0A2U3WQB8	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L32.	0.861
ARL6IP1	LOC101379001	A0A2U3WN19	A0A2U3VLD9	ADP-ribosylation factor-like protein 6-interacting protein 1.	60S ribosomal protein L4 isoform X1.	0.974