(12 nodes) Cytosolic large ribosomal subunit network (Odobenus rosmarus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL24	60S ribosomal protein L24 isoform X1. (157 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	RPL8	60S ribosomal protein L8. (257 aa)
	RPL31	60S ribosomal protein L31. (125 aa)
	RPL7	LOW QUALITY PROTEIN: 60S ribosomal protein L7. (319 aa)
	RPL37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	RPL13A	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	RPL27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	RPL7A	60S ribosomal protein L7a. (266 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (159 aa)
	RPL28	60S ribosomal protein L28. (137 aa)
	RPL21	60S ribosomal protein L21. (160 aa)

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL13	RPL13A	A0A2U3VCA7	A0A2U3WM00	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	0.999
RPL13	RPL21	A0A2U3VCA7	A0A2U3ZVA3	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L21.	0.999
RPL13	RPL24	A0A2U3VCA7	A0A2U3VB49	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L24 isoform X1.	0.999
RPL13	RPL27	A0A2U3VCA7	A0A2U3WNJ2	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
RPL13	RPL28	A0A2U3VCA7	A0A2U3ZKC8	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L28.	0.999
RPL13	RPL29	A0A2U3VCA7	A0A2U3WQR0	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
RPL13	RPL31	A0A2U3VCA7	A0A2U3W366	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L31.	0.998
RPL13	RPL37	A0A2U3VCA7	A0A2U3WK10	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
RPL13	RPL7	A0A2U3VCA7	A0A2U3W6Z1	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	LOW QUALITY PROTEIN: 60S ribosomal protein L7.	0.999
RPL13	RPL7A	A0A2U3VCA7	A0A2U3WQE3	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L7a.	0.999
RPL13	RPL8	A0A2U3VCA7	A0A2U3VZ48	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L8.	0.999
RPL13A	RPL13	A0A2U3WM00	A0A2U3VCA7	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
RPL13A	RPL21	A0A2U3WM00	A0A2U3ZVA3	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L21.	0.999
RPL13A	RPL24	A0A2U3WM00	A0A2U3VB49	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L24 isoform X1.	0.999
RPL13A	RPL27	A0A2U3WM00	A0A2U3WNJ2	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
RPL13A	RPL28	A0A2U3WM00	A0A2U3ZKC8	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L28.	0.999
RPL13A	RPL29	A0A2U3WM00	A0A2U3WQR0	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
RPL13A	RPL31	A0A2U3WM00	A0A2U3W366	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L31.	0.998
RPL13A	RPL37	A0A2U3WM00	A0A2U3WK10	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
RPL13A	RPL7	A0A2U3WM00	A0A2U3W6Z1	60S ribosomal protein L13a isoform X1; Belongs to the universal ribosomal protein uL13 family.	LOW QUALITY PROTEIN: 60S ribosomal protein L7.	0.999