STRINGSTRING
SBDS SBDS RPS5 RPS5 RPF2 RPF2 LOC101364916 LOC101364916 MRPL20 MRPL20 RPS19 RPS19 CCDC105 CCDC105 LOC101377332 LOC101377332 RPS28 RPS28 MRPL22 MRPL22 PWP2 PWP2 RPS27L RPS27L MTERF4 MTERF4 BRIX1 BRIX1 LOC101372135 LOC101372135 ABT1 ABT1 NOP2 NOP2 MTERF3 MTERF3 LOC101380361 LOC101380361 DHX29 DHX29 EFTUD1 EFTUD1 LOC101379597 LOC101379597 FASTKD2 FASTKD2 FTSJ2 FTSJ2 LOC101378433 LOC101378433 MRTO4 MRTO4 DDX3X DDX3X LOC101371301 LOC101371301 LOC101386600 LOC101386600 LOC105757804 LOC105757804 EIF6 EIF6 LOC101371512 LOC101371512 RPL6 RPL6 MRPS2 MRPS2 RPSA RPSA LOC101374062 LOC101374062 LOC105758282 LOC105758282 LOC101365175 LOC101365175 NLE1 NLE1 LOC105758450 LOC105758450 MDN1 MDN1 LOC101383480 LOC101383480 RPL5 RPL5 BOP1 BOP1 RPL24 RPL24 LOC101371734 LOC101371734 LOC101380438 LOC101380438 LOC101380833 LOC101380833 NIP7 NIP7 DDX28 DDX28 MRPS7 MRPS7 RPS15 RPS15 PRKDC PRKDC DHX37 DHX37 RPLP0 RPLP0 LOC101376893 LOC101376893 RRP7A RRP7A NGRN NGRN MRPS11 MRPS11 C1QBP C1QBP LOC101373803 LOC101373803 DHX30 DHX30 ERAL1 ERAL1 GLTSCR2 GLTSCR2 LOC101370120 LOC101370120 LOC101385791 LOC101385791 XRCC5 XRCC5 RRS1 RRS1 RPS14 RPS14 RPS27 RPS27 LOC101381949 LOC101381949 MPV17L2 MPV17L2 RPL10L RPL10L EIF2A EIF2A LOC101385100 LOC101385100
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SBDSRibosome maturation protein SBDS. (250 aa)
RPS540S ribosomal protein S5 isoform X1; Belongs to the universal ribosomal protein uS7 family. (242 aa)
RPF2Ribosome production factor 2 homolog. (306 aa)
LOC10136491640S ribosomal protein S27-like. (82 aa)
MRPL2039S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
RPS1940S ribosomal protein S19. (145 aa)
CCDC105Coiled-coil domain-containing protein 105. (498 aa)
LOC10137733240S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
RPS2840S ribosomal protein S28. (69 aa)
MRPL2239S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (210 aa)
PWP2Periodic tryptophan protein 2 homolog. (915 aa)
RPS27L40S ribosomal protein S27. (84 aa)
MTERF4Transcription termination factor 4, mitochondrial. (351 aa)
BRIX1Ribosome biogenesis protein BRX1 homolog. (353 aa)
LOC10137213540S ribosomal protein S27-like. (109 aa)
ABT1Activator of basal transcription 1. (269 aa)
NOP2Probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (818 aa)
MTERF3Transcription termination factor 3, mitochondrial. (417 aa)
LOC10138036160S ribosomal protein L10-like. (242 aa)
DHX29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)
EFTUD1Elongation factor Tu GTP-binding domain-containing protein 1 isoform X1. (1128 aa)
LOC10137959740S ribosomal protein S27-like. (84 aa)
FASTKD2LOW QUALITY PROTEIN: FAST kinase domain-containing protein 2. (686 aa)
FTSJ2rRNA methyltransferase 2, mitochondrial. (249 aa)
LOC10137843340S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (297 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (249 aa)
DDX3XATP-dependent RNA helicase DDX3X isoform X1; Belongs to the DEAD box helicase family. (674 aa)
LOC10137130140S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (296 aa)
LOC101386600Uncharacterized protein CXorf66 homolog. (376 aa)
LOC10575780440S ribosomal protein S27-like. (91 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Behaves as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (RACK1)- dependent protein kinase C activity. In tissues responsive to insulin, contro [...] (253 aa)
LOC10137151240S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
RPL660S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (249 aa)
MRPS2LOW QUALITY PROTEIN: 28S ribosomal protein S2, mitochondrial. (319 aa)
RPSA40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits; Belongs to the universal ribosomal protein uS2 family. (234 aa)
LOC10137406240S ribosomal protein S27-like. (88 aa)
LOC10575828240S ribosomal protein S27-like. (135 aa)
LOC10136517560S ribosomal protein L6-like. (203 aa)
NLE1Notchless protein homolog 1 isoform X1. (486 aa)
LOC10575845040S_SA_C domain-containing protein. (302 aa)
MDN1Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5595 aa)
LOC10138348040S ribosomal protein S27. (84 aa)
RPL560S ribosomal protein L5 isoform X1. (297 aa)
BOP1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (794 aa)
RPL2460S ribosomal protein L24 isoform X1. (157 aa)
LOC10137173440S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
LOC10138043860S ribosomal protein L10-like isoform X1. (214 aa)
LOC10138083360S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (288 aa)
NIP760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
DDX28Probable ATP-dependent RNA helicase DDX28. (540 aa)
MRPS728S ribosomal protein S7, mitochondrial. (242 aa)
RPS1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
PRKDCDNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family. (4136 aa)
DHX37Probable ATP-dependent RNA helicase DHX37. (1163 aa)
RPLP060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
LOC10137689340S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
RRP7ARibosomal RNA-processing protein 7 homolog A. (280 aa)
NGRNNeugrin. (294 aa)
MRPS1128S ribosomal protein S11, mitochondrial isoform X1; Belongs to the universal ribosomal protein uS11 family. (196 aa)
C1QBPComplement component 1 Q subcomponent-binding protein, mitochondrial. (272 aa)
LOC101373803Suppressor of SWI4 1 homolog isoform X1; Belongs to the G-protein coupled receptor 1 family. (786 aa)
DHX30Putative ATP-dependent RNA helicase DHX30 isoform X1. (1222 aa)
ERAL1GTPase Era, mitochondrial. (437 aa)
GLTSCR2Glioma tumor suppressor candidate region gene 2 protein isoform X1. (499 aa)
LOC10137012040S ribosomal protein S27-like. (107 aa)
LOC101385791ATP-dependent RNA helicase DDX3X-like isoform X1; Belongs to the DEAD box helicase family. (663 aa)
XRCC5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (732 aa)
RRS1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (379 aa)
RPS1440S ribosomal protein S14 isoform X1; Belongs to the universal ribosomal protein uS11 family. (151 aa)
RPS2740S ribosomal protein S27. (84 aa)
LOC10138194960S ribosomal protein L10-like. (100 aa)
MPV17L2Mpv17-like protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (206 aa)
RPL10L60S ribosomal protein L10-like isoform X1. (214 aa)
EIF2AEukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (593 aa)
LOC10138510060S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (156 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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