(7 nodes) Large ribosomal subunit rRNA binding network (Odobenus rosmarus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL23	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	RPLP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	LOC101373818	60S ribosomal protein L12-like. (132 aa)
	LOC101378479	60S ribosomal protein L12 isoform X2; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	RPUSD4	RNA pseudouridylate synthase domain-containing protein 4. (377 aa)
	LOC101369285	60S ribosomal protein L12-like isoform X1; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	LOC101378365	Uncharacterized protein LOC101378365; Belongs to the universal ribosomal protein uL11 family. (349 aa)

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101369285	RPL23	A0A2U3WZ31	A0A2U3VJQ4	60S ribosomal protein L12-like isoform X1; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.984
LOC101369285	RPLP0	A0A2U3WZ31	A0A2U3VNZ7	60S ribosomal protein L12-like isoform X1; Belongs to the universal ribosomal protein uL11 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.973
LOC101373818	RPL23	A0A2U3W305	A0A2U3VJQ4	60S ribosomal protein L12-like.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.984
LOC101373818	RPLP0	A0A2U3W305	A0A2U3VNZ7	60S ribosomal protein L12-like.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.973
LOC101378365	RPL23	A0A2U3ZLC7	A0A2U3VJQ4	Uncharacterized protein LOC101378365; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.984
LOC101378365	RPLP0	A0A2U3ZLC7	A0A2U3VNZ7	Uncharacterized protein LOC101378365; Belongs to the universal ribosomal protein uL11 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.973
LOC101378479	RPL23	A0A2U3WCL4	A0A2U3VJQ4	60S ribosomal protein L12 isoform X2; Belongs to the universal ribosomal protein uL11 family.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.984
LOC101378479	RPLP0	A0A2U3WCL4	A0A2U3VNZ7	60S ribosomal protein L12 isoform X2; Belongs to the universal ribosomal protein uL11 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.973
RPL23	LOC101369285	A0A2U3VJQ4	A0A2U3WZ31	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	60S ribosomal protein L12-like isoform X1; Belongs to the universal ribosomal protein uL11 family.	0.984
RPL23	LOC101373818	A0A2U3VJQ4	A0A2U3W305	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	60S ribosomal protein L12-like.	0.984
RPL23	LOC101378365	A0A2U3VJQ4	A0A2U3ZLC7	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein LOC101378365; Belongs to the universal ribosomal protein uL11 family.	0.984
RPL23	LOC101378479	A0A2U3VJQ4	A0A2U3WCL4	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	60S ribosomal protein L12 isoform X2; Belongs to the universal ribosomal protein uL11 family.	0.984
RPL23	RPLP0	A0A2U3VJQ4	A0A2U3VNZ7	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
RPL23	RPUSD4	A0A2U3VJQ4	A0A2U3WJ50	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	RNA pseudouridylate synthase domain-containing protein 4.	0.642
RPLP0	LOC101369285	A0A2U3VNZ7	A0A2U3WZ31	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L12-like isoform X1; Belongs to the universal ribosomal protein uL11 family.	0.973
RPLP0	LOC101373818	A0A2U3VNZ7	A0A2U3W305	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L12-like.	0.973
RPLP0	LOC101378365	A0A2U3VNZ7	A0A2U3ZLC7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein LOC101378365; Belongs to the universal ribosomal protein uL11 family.	0.973
RPLP0	LOC101378479	A0A2U3VNZ7	A0A2U3WCL4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L12 isoform X2; Belongs to the universal ribosomal protein uL11 family.	0.973
RPLP0	RPL23	A0A2U3VNZ7	A0A2U3VJQ4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
RPUSD4	RPL23	A0A2U3WJ50	A0A2U3VJQ4	RNA pseudouridylate synthase domain-containing protein 4.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.642