STRINGSTRING
SF3B3 SF3B3 SMU1 SMU1 SF3B1 SF3B1 SART1 SART1 SF3B2 SF3B2 PRPF31 PRPF31 EFTUD2 EFTUD2 WBP4 WBP4 PRPF3 PRPF3 PRPF8 PRPF8 SRRM2 SRRM2 SF3A3 SF3A3 PRPF38A PRPF38A TXNL4A TXNL4A SNRPB2 SNRPB2 BUD13 BUD13 LSM2 LSM2 LOC101376578 LOC101376578 MFAP1 MFAP1 PRPF6 PRPF6 DHX16 DHX16 LSM8 LSM8 SNRPA1 SNRPA1 LSM4 LSM4 CWC22 CWC22 SNIP1 SNIP1 CWC27 CWC27 SNRPD2 SNRPD2 SF3A1 SF3A1 SNRNP200 SNRNP200 LOC101373629 LOC101373629 SNRPB SNRPB IK IK ZMAT2 ZMAT2 PHF5A PHF5A NHP2L1 NHP2L1 SF3B5 SF3B5 PRPF4 PRPF4 LSM3 LSM3 SF3A2 SF3A2 LSM7 LSM7 AMH AMH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SF3B3Splicing factor 3B subunit 3. (1217 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1304 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1 isoform X1. (806 aa)
SF3B2Splicing factor 3B subunit 2 isoform X1. (896 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1. (499 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
WBP4WW domain-binding protein 4 isoform X1. (392 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (683 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (195 aa)
SF3A3Splicing factor 3A subunit 3 isoform X1. (583 aa)
PRPF38Apre-mRNA-splicing factor 38A isoform X1. (319 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'' isoform X1. (225 aa)
BUD13BUD13 homolog. (490 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
LOC101376578Small nuclear ribonucleoprotein F-like. (86 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
PRPF6pre-mRNA-processing factor 6 isoform X1. (941 aa)
DHX16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1043 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
CWC22pre-mRNA-splicing factor CWC22 homolog isoform X1. (908 aa)
SNIP1Smad nuclear-interacting protein 1. (397 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (472 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
LOC101373629Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (123 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
IKProtein Red. (563 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
PHF5APHD finger-like domain-containing protein 5A. (110 aa)
NHP2L1Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (163 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SF3A2Splicing factor 3A subunit 2. (471 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (103 aa)
AMHMuellerian-inhibiting factor. (578 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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