STRINGSTRING
CRNKL1 CRNKL1 LOC101378830 LOC101378830 LOC101377293 LOC101377293 LOC101386064 LOC101386064 DGCR14 DGCR14 LOC101376302 LOC101376302 SF1 SF1 DDX39B DDX39B RBMX RBMX DHX38 DHX38 CTNNBL1 CTNNBL1 SNRPC SNRPC EFTUD2 EFTUD2 WBP4 WBP4 U2AF2 U2AF2 LGALS3 LGALS3 PRPF8 PRPF8 SRRM2 SRRM2 LUC7L LUC7L SF3A3 SF3A3 LOC101379623 LOC101379623 CWF19L2 CWF19L2 SNRPD3 SNRPD3 PRPF38A PRPF38A RBMX2 RBMX2 CCDC130 CCDC130 GCFC2 GCFC2 MTHFSD MTHFSD LOC101383928 LOC101383928 LUC7L3 LUC7L3 LOC101376975 LOC101376975 SRRM1 SRRM1 LOC101372568 LOC101372568 TXNL4A TXNL4A EFTUD1 EFTUD1 LOC101369699 LOC101369699 SNRNP70 SNRNP70 PRPF39 PRPF39 RBM41 RBM41 PRPF4B PRPF4B LOC101372449 LOC101372449 RNPC3 RNPC3 LOC101376578 LOC101376578 TFIP11 TFIP11 CWC15 CWC15 HNRNPM HNRNPM XAB2 XAB2 MFAP1 MFAP1 PPIL1 PPIL1 PTBP2 PTBP2 PRPF18 PRPF18 DHX16 DHX16 GLB1 GLB1 AQR AQR LOC101378288 LOC101378288 UHRF1BP1 UHRF1BP1 DHX8 DHX8 PRPF38B PRPF38B CDC40 CDC40 SNRNP40 SNRNP40 SNRNP48 SNRNP48 SNRPA1 SNRPA1 GPATCH1 GPATCH1 RNF113A RNF113A ZNF865 ZNF865 SLU7 SLU7 EIF4A3 EIF4A3 ALYREF ALYREF UBE2J1 UBE2J1 CWC22 CWC22 SNRNP25 SNRNP25 ADAR ADAR DHX15 DHX15 RBM22 RBM22 PPIE PPIE SNIP1 SNIP1 LOC101375942 LOC101375942 CWC27 CWC27 PPWD1 PPWD1 HNRNPC HNRNPC CWF19L1 CWF19L1 DDX41 DDX41 SNRPD2 SNRPD2 DDX23 DDX23 BTBD19 BTBD19 SNRPF SNRPF SF3A1 SF3A1 ZMAT5 ZMAT5 SNRNP200 SNRNP200 SNW1 SNW1 CCDC12 CCDC12 SRRM3 SRRM3 DDX39A DDX39A WDR83 WDR83 SNRPG SNRPG SNRPB SNRPB IK IK ZMAT2 ZMAT2 SF3B5 SF3B5 GPKOW GPKOW MYEF2 MYEF2 ZCRB1 ZCRB1 SNRNP35 SNRNP35 ZCCHC8 ZCCHC8 ISY1 ISY1 WDR25 WDR25 SF3A2 SF3A2 CCDC94 CCDC94 CWC25 CWC25 SF3B6 SF3B6 PRPF40A PRPF40A SYF2 SYF2 BUD31 BUD31 PPIL3 PPIL3 AAR2 AAR2 SMU1 SMU1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CRNKL1LOW QUALITY PROTEIN: crooked neck-like protein 1. (829 aa)
LOC101378830LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein C-like. (294 aa)
LOC101377293LOW QUALITY PROTEIN: CWF19-like protein 2. (896 aa)
LOC101386064LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A-like. (914 aa)
DGCR14Protein DGCR14 isoform X1. (478 aa)
LOC101376302LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like. (911 aa)
SF1Splicing factor 1. (689 aa)
DDX39BSpliceosome RNA helicase DDX39B isoform X1. (442 aa)
RBMXRNA-binding motif protein, X chromosome isoform X1. (391 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1239 aa)
CTNNBL1Beta-catenin-like protein 1 isoform X1. (569 aa)
SNRPCU1 small nuclear ribonucleoprotein C isoform X1. (171 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
WBP4WW domain-binding protein 4 isoform X1. (392 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
LGALS3Galectin. (270 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (195 aa)
LUC7LPutative RNA-binding protein Luc7-like 1 isoform X1. (377 aa)
SF3A3Splicing factor 3A subunit 3 isoform X1. (583 aa)
LOC101379623LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked 2-like. (322 aa)
CWF19L2CWF19-like protein 2. (1062 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PRPF38Apre-mRNA-splicing factor 38A isoform X1. (319 aa)
RBMX2RNA-binding motif protein, X-linked 2. (296 aa)
CCDC130Coiled-coil domain-containing protein 130 isoform X1. (476 aa)
GCFC2GC-rich sequence DNA-binding factor 2 isoform X1. (783 aa)
MTHFSDMethenyltetrahydrofolate synthase domain-containing protein. (396 aa)
LOC101383928LOW QUALITY PROTEIN: splicing factor 1-like. (639 aa)
LUC7L3Luc7-like protein 3 isoform X1. (489 aa)
LOC101376975pre-mRNA-splicing factor SYF2-like. (265 aa)
SRRM1Serine/arginine repetitive matrix protein 1. (783 aa)
LOC101372568RNA-binding protein 41. (228 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
EFTUD1Elongation factor Tu GTP-binding domain-containing protein 1 isoform X1. (1128 aa)
LOC101369699RNA-binding motif protein, X chromosome-like. (391 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa isoform X1. (438 aa)
PRPF39pre-mRNA-processing factor 39 isoform X1. (667 aa)
RBM41RNA-binding protein 41. (269 aa)
PRPF4BSerine/threonine-protein kinase PRP4 homolog. (1041 aa)
LOC101372449Putative RNA-binding protein Luc7-like 2 isoform X1. (392 aa)
RNPC3RNA-binding protein 40 isoform X1. (518 aa)
LOC101376578Small nuclear ribonucleoprotein F-like. (86 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (837 aa)
CWC15Spliceosome-associated protein CWC15 homolog. (231 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (712 aa)
XAB2pre-mRNA-splicing factor SYF1. (855 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
PTBP2Polypyrimidine tract-binding protein 2 isoform X1. (540 aa)
PRPF18pre-mRNA-splicing factor 18. (342 aa)
DHX16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1043 aa)
GLB1Beta-galactosidase. (789 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1491 aa)
LOC101378288Dentin sialophosphoprotein-like. (1380 aa)
UHRF1BP1UHRF1-binding protein 1. (1441 aa)
DHX8ATP-dependent RNA helicase DHX8. (1220 aa)
PRPF38Bpre-mRNA-splicing factor 38B. (549 aa)
CDC40pre-mRNA-processing factor 17. (579 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (338 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
GPATCH1G patch domain-containing protein 1. (932 aa)
RNF113ARING finger protein 113A. (344 aa)
ZNF865Zinc finger protein 865. (1052 aa)
SLU7pre-mRNA-splicing factor SLU7. (633 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
ALYREFTHO complex subunit 4. (255 aa)
UBE2J1Ubiquitin-conjugating enzyme E2 J1. (318 aa)
CWC22pre-mRNA-splicing factor CWC22 homolog isoform X1. (908 aa)
SNRNP25U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (123 aa)
ADARDouble-stranded RNA-specific adenosine deaminase. (1149 aa)
DHX15pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (795 aa)
RBM22pre-mRNA-splicing factor RBM22. (419 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
SNIP1Smad nuclear-interacting protein 1. (397 aa)
LOC101375942RING finger protein 113A-like. (344 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (472 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1. (646 aa)
HNRNPCHeterogeneous nuclear ribonucleoproteins C1/C2 isoform X1. (307 aa)
CWF19L1CWF19-like protein 1 isoform X1. (538 aa)
DDX41Probable ATP-dependent RNA helicase DDX41 isoform X1. (622 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (820 aa)
BTBD19BTB/POZ domain-containing protein 19. (291 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
ZMAT5Zinc finger matrin-type protein 5. (170 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
SNW1SNW domain-containing protein 1 isoform X1. (536 aa)
CCDC12Coiled-coil domain-containing protein 12. (166 aa)
SRRM3Serine/arginine repetitive matrix protein 3. (593 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
WDR83WD repeat domain-containing protein 83. (315 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
IKProtein Red. (563 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
GPKOWG patch domain and KOW motifs-containing protein isoform X1. (481 aa)
MYEF2Myelin expression factor 2 isoform X1. (597 aa)
ZCRB1Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (217 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8. (709 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (285 aa)
WDR25WD repeat-containing protein 25. (539 aa)
SF3A2Splicing factor 3A subunit 2. (471 aa)
CCDC94Coiled-coil domain-containing protein 94. (324 aa)
CWC25pre-mRNA-splicing factor CWC25 homolog. (425 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
PRPF40Apre-mRNA-processing factor 40 homolog A isoform X1. (994 aa)
SYF2pre-mRNA-splicing factor SYF2. (246 aa)
BUD31Protein BUD31 homolog. (144 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
AAR2Protein AAR2 homolog. (384 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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