STRINGSTRING
PPIE PPIE LOC101375942 LOC101375942 CWC27 CWC27 SNRPD2 SNRPD2 SF3A1 SF3A1 SNRNP200 SNRNP200 SNW1 SNW1 SRRM3 SRRM3 SNRPG SNRPG SNRPB SNRPB IK IK ZMAT2 ZMAT2 SF3B5 SF3B5 SMU1 SMU1 CWC25 CWC25 CCDC94 CCDC94 SF3A2 SF3A2 ISY1 ISY1 CRNKL1 CRNKL1 SNRPC SNRPC EFTUD2 EFTUD2 WBP4 WBP4 U2AF2 U2AF2 SRRM2 SRRM2 LOC101379623 LOC101379623 SNRPD3 SNRPD3 PRPF38A PRPF38A RBMX2 RBMX2 GCFC2 GCFC2 TXNL4A TXNL4A EFTUD1 EFTUD1 PRPF39 PRPF39 TFIP11 TFIP11 XAB2 XAB2 MFAP1 MFAP1 PPIL1 PPIL1 PRPF18 PRPF18 DHX16 DHX16 AQR AQR LOC101378288 LOC101378288 UHRF1BP1 UHRF1BP1 RNF113A RNF113A ZNF865 ZNF865 EIF4A3 EIF4A3 DHX15 DHX15 RBM22 RBM22 SNIP1 SNIP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
LOC101375942RING finger protein 113A-like. (344 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (472 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
SNW1SNW domain-containing protein 1 isoform X1. (536 aa)
SRRM3Serine/arginine repetitive matrix protein 3. (593 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
IKProtein Red. (563 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
CWC25pre-mRNA-splicing factor CWC25 homolog. (425 aa)
CCDC94Coiled-coil domain-containing protein 94. (324 aa)
SF3A2Splicing factor 3A subunit 2. (471 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (285 aa)
CRNKL1LOW QUALITY PROTEIN: crooked neck-like protein 1. (829 aa)
SNRPCU1 small nuclear ribonucleoprotein C isoform X1. (171 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
WBP4WW domain-binding protein 4 isoform X1. (392 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (195 aa)
LOC101379623LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked 2-like. (322 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PRPF38Apre-mRNA-splicing factor 38A isoform X1. (319 aa)
RBMX2RNA-binding motif protein, X-linked 2. (296 aa)
GCFC2GC-rich sequence DNA-binding factor 2 isoform X1. (783 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
EFTUD1Elongation factor Tu GTP-binding domain-containing protein 1 isoform X1. (1128 aa)
PRPF39pre-mRNA-processing factor 39 isoform X1. (667 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (837 aa)
XAB2pre-mRNA-splicing factor SYF1. (855 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
PRPF18pre-mRNA-splicing factor 18. (342 aa)
DHX16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1043 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1491 aa)
LOC101378288Dentin sialophosphoprotein-like. (1380 aa)
UHRF1BP1UHRF1-binding protein 1. (1441 aa)
RNF113ARING finger protein 113A. (344 aa)
ZNF865Zinc finger protein 865. (1052 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
DHX15pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (795 aa)
RBM22pre-mRNA-splicing factor RBM22. (419 aa)
SNIP1Smad nuclear-interacting protein 1. (397 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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