30 items (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101366771	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (174 aa)
	APOBR	Apolipoprotein B receptor. (1189 aa)
	GPIHBP1	Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1. (201 aa)
	LIPC	Hepatic triacylglycerol lipase. (500 aa)
	LPL	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans. (479 aa)
	APOL6	LOW QUALITY PROTEIN: apolipoprotein L6. (344 aa)
	APOA2	Truncated apolipoprotein A-II; May stabilize HDL (high density lipoprotein) structure by its association with lipids, and affect the HDL metabolism; Belongs to the apolipoprotein A2 family. (100 aa)
	APOA1	Truncated apolipoprotein A-I; Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). As part of the SPAP complex, activates spermatozoa motility; Belongs to the apolipoprotein A1/A4/E family. (266 aa)
	APOC1	Truncated apolipoprotein C-I; Inhibitor of lipoprotein binding to the low density lipoprotein (LDL) receptor, LDL receptor-related protein, and very low density lipoprotein (VLDL) receptor. Associates with high density lipoproteins (HDL) and the triacylglycerol-rich lipoproteins in the plasma and makes up about 10% of the protein of the VLDL and 2% of that of HDL. Appears to interfere directly with fatty acid uptake and is also the major plasma inhibitor of cholesteryl ester transfer protein (CETP). Binds free fatty acids and reduces their intracellular esterification. Modulates the in [...] (88 aa)
	LCAT	Phosphatidylcholine-sterol acyltransferase. (440 aa)
	PON1	Serum paraoxonase/arylesterase 1. (355 aa)
	PCYOX1	Prenylcysteine oxidase 1 isoform X1. (505 aa)
	APOC2	Apolipoprotein C-II. (101 aa)
	APOC4	Apolipoprotein C-IV. (123 aa)
	APOE	Apolipoprotein E. (329 aa)
	CLPTM1	LOW QUALITY PROTEIN: cleft lip and palate transmembrane protein 1. (677 aa)
	PLTP	Phospholipid transfer protein. (444 aa)
	APOB	Apolipoprotein B-100. (4435 aa)
	ABCG1	ATP-binding cassette sub-family G member 1 isoform X1. (678 aa)
	NR1I3	Nuclear receptor subfamily 1 group I member 3 isoform X1. (348 aa)
	BIN1	Myc box-dependent-interacting protein 1 isoform X1. (594 aa)
	PLA2G7	Platelet-activating factor acetylhydrolase. (440 aa)
	ABCA1	ATP-binding cassette sub-family A member 1. (2206 aa)
	LIPG	Endothelial lipase. (503 aa)
	ABCA2	ATP-binding cassette sub-family A member 2. (2439 aa)
	APOM	Apolipoprotein M isoform X1. (188 aa)
	APOA5	Apolipoprotein A-V. (367 aa)
	APOA4	Apolipoprotein A-IV. (382 aa)
	APOC3	Apolipoprotein C-III. (100 aa)
	VLDLR	Very low-density lipoprotein receptor isoform X1. (876 aa)

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA1	APOA1	A0A2U3WLL8	P0DMS6	ATP-binding cassette sub-family A member 1.	Truncated apolipoprotein A-I; Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). As part of the SPAP complex, activates spermatozoa motility; Belongs to the apolipoprotein A1/A4/E family.	0.993
ABCA1	APOA2	A0A2U3WLL8	P0DM94	ATP-binding cassette sub-family A member 1.	Truncated apolipoprotein A-II; May stabilize HDL (high density lipoprotein) structure by its association with lipids, and affect the HDL metabolism; Belongs to the apolipoprotein A2 family.	0.455
ABCA1	APOA4	A0A2U3WLL8	A0A2U3X0L9	ATP-binding cassette sub-family A member 1.	Apolipoprotein A-IV.	0.542
ABCA1	APOB	A0A2U3WLL8	A0A2U3WB12	ATP-binding cassette sub-family A member 1.	Apolipoprotein B-100.	0.522
ABCA1	APOC3	A0A2U3WLL8	A0A2U3X0U6	ATP-binding cassette sub-family A member 1.	Apolipoprotein C-III.	0.405
ABCA1	APOE	A0A2U3WLL8	A0A2U3VZR7	ATP-binding cassette sub-family A member 1.	Apolipoprotein E.	0.629
ABCA1	LCAT	A0A2U3WLL8	A0A2U3VFD8	ATP-binding cassette sub-family A member 1.	Phosphatidylcholine-sterol acyltransferase.	0.460
ABCA1	LIPC	A0A2U3WLL8	A0A2U3ZNC0	ATP-binding cassette sub-family A member 1.	Hepatic triacylglycerol lipase.	0.456
ABCA2	APOA1	A0A2U3WU08	P0DMS6	ATP-binding cassette sub-family A member 2.	Truncated apolipoprotein A-I; Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). As part of the SPAP complex, activates spermatozoa motility; Belongs to the apolipoprotein A1/A4/E family.	0.941
ABCA2	APOA2	A0A2U3WU08	P0DM94	ATP-binding cassette sub-family A member 2.	Truncated apolipoprotein A-II; May stabilize HDL (high density lipoprotein) structure by its association with lipids, and affect the HDL metabolism; Belongs to the apolipoprotein A2 family.	0.455
ABCA2	APOA4	A0A2U3WU08	A0A2U3X0L9	ATP-binding cassette sub-family A member 2.	Apolipoprotein A-IV.	0.542
ABCA2	APOB	A0A2U3WU08	A0A2U3WB12	ATP-binding cassette sub-family A member 2.	Apolipoprotein B-100.	0.522
ABCA2	APOC3	A0A2U3WU08	A0A2U3X0U6	ATP-binding cassette sub-family A member 2.	Apolipoprotein C-III.	0.405
ABCA2	APOE	A0A2U3WU08	A0A2U3VZR7	ATP-binding cassette sub-family A member 2.	Apolipoprotein E.	0.629
ABCA2	LCAT	A0A2U3WU08	A0A2U3VFD8	ATP-binding cassette sub-family A member 2.	Phosphatidylcholine-sterol acyltransferase.	0.460
ABCA2	LIPC	A0A2U3WU08	A0A2U3ZNC0	ATP-binding cassette sub-family A member 2.	Hepatic triacylglycerol lipase.	0.456
ABCG1	APOA1	A0A2U3WDK0	P0DMS6	ATP-binding cassette sub-family G member 1 isoform X1.	Truncated apolipoprotein A-I; Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). As part of the SPAP complex, activates spermatozoa motility; Belongs to the apolipoprotein A1/A4/E family.	0.807
ABCG1	APOA4	A0A2U3WDK0	A0A2U3X0L9	ATP-binding cassette sub-family G member 1 isoform X1.	Apolipoprotein A-IV.	0.468
ABCG1	APOB	A0A2U3WDK0	A0A2U3WB12	ATP-binding cassette sub-family G member 1 isoform X1.	Apolipoprotein B-100.	0.537
ABCG1	APOE	A0A2U3WDK0	A0A2U3VZR7	ATP-binding cassette sub-family G member 1 isoform X1.	Apolipoprotein E.	0.706