STRINGSTRING
PPIE PPIE PPWD1 PPWD1 HNRNPC HNRNPC DDX41 DDX41 SNRPD2 SNRPD2 DDX23 DDX23 ISY1 ISY1 ZCCHC8 ZCCHC8 SNRPB SNRPB PRPF4B PRPF4B EFTUD1 EFTUD1 SRRM1 SRRM1 XAB2 XAB2 PPIL3 PPIL3 WDR25 WDR25 MTHFSD MTHFSD SRRM2 SRRM2 EFTUD2 EFTUD2 CRNKL1 CRNKL1 LOC101376302 LOC101376302 DGCR14 DGCR14 LOC101378830 LOC101378830 SNRPG SNRPG WDR83 WDR83 SRRM3 SRRM3 SNW1 SNW1 SNRNP200 SNRNP200 BTBD19 BTBD19 PPIL1 PPIL1 AQR AQR CDC40 CDC40 GPATCH1 GPATCH1 ALYREF ALYREF RBM22 RBM22
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1. (646 aa)
HNRNPCHeterogeneous nuclear ribonucleoproteins C1/C2 isoform X1. (307 aa)
DDX41Probable ATP-dependent RNA helicase DDX41 isoform X1. (622 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (820 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (285 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8. (709 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF4BSerine/threonine-protein kinase PRP4 homolog. (1041 aa)
EFTUD1Elongation factor Tu GTP-binding domain-containing protein 1 isoform X1. (1128 aa)
SRRM1Serine/arginine repetitive matrix protein 1. (783 aa)
XAB2pre-mRNA-splicing factor SYF1. (855 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
WDR25WD repeat-containing protein 25. (539 aa)
MTHFSDMethenyltetrahydrofolate synthase domain-containing protein. (396 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (195 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component isoform X1. (972 aa)
CRNKL1LOW QUALITY PROTEIN: crooked neck-like protein 1. (829 aa)
LOC101376302LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like. (911 aa)
DGCR14Protein DGCR14 isoform X1. (478 aa)
LOC101378830LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein C-like. (294 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
WDR83WD repeat domain-containing protein 83. (315 aa)
SRRM3Serine/arginine repetitive matrix protein 3. (593 aa)
SNW1SNW domain-containing protein 1 isoform X1. (536 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
BTBD19BTB/POZ domain-containing protein 19. (291 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1491 aa)
CDC40pre-mRNA-processing factor 17. (579 aa)
GPATCH1G patch domain-containing protein 1. (932 aa)
ALYREFTHO complex subunit 4. (255 aa)
RBM22pre-mRNA-splicing factor RBM22. (419 aa)
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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