16 items (Leptonychotes weddellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL34	60S ribosomal protein L34. (117 aa)
	RPL27A	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	LOC102731526	60S ribosomal protein L37a-like. (92 aa)
	RPL24	60S ribosomal protein L24 isoform X1. (157 aa)
	RPL6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (288 aa)
	LOC102744738	60S ribosomal protein L31 isoform X1. (125 aa)
	RPL35A	60S ribosomal protein L35a isoform X1. (110 aa)
	RPL14	60S ribosomal protein L14 isoform X1. (210 aa)
	RPL32	60S ribosomal protein L32. (124 aa)
	SRP9	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
	LOC102743433	Ribosomal protein L18-like. (188 aa)
	RPL22	60S ribosomal protein L22. (128 aa)
	RPL3	60S ribosomal protein L3 isoform X1; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	RPL18A	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	RPL36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	LOC102738168	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102731526	LOC102738168	A0A2U3XDN5	A0A2U3Z3N3	60S ribosomal protein L37a-like.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC102731526	LOC102743433	A0A2U3XDN5	A0A2U3YNX5	60S ribosomal protein L37a-like.	Ribosomal protein L18-like.	0.999
LOC102731526	LOC102744738	A0A2U3XDN5	A0A2U3XX88	60S ribosomal protein L37a-like.	60S ribosomal protein L31 isoform X1.	0.999
LOC102731526	RPL14	A0A2U3XDN5	A0A2U3Y519	60S ribosomal protein L37a-like.	60S ribosomal protein L14 isoform X1.	0.999
LOC102731526	RPL18A	A0A2U3XDN5	A0A2U3Z0X5	60S ribosomal protein L37a-like.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
LOC102731526	RPL22	A0A2U3XDN5	A0A2U3YRS8	60S ribosomal protein L37a-like.	60S ribosomal protein L22.	0.999
LOC102731526	RPL24	A0A2U3XDN5	A0A2U3XDR0	60S ribosomal protein L37a-like.	60S ribosomal protein L24 isoform X1.	0.999
LOC102731526	RPL27A	A0A2U3XDN5	A0A2U3XAP2	60S ribosomal protein L37a-like.	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
LOC102731526	RPL3	A0A2U3XDN5	A0A2U3YT61	60S ribosomal protein L37a-like.	60S ribosomal protein L3 isoform X1; Belongs to the universal ribosomal protein uL3 family.	0.999
LOC102731526	RPL32	A0A2U3XDN5	A0A2U3Y9B2	60S ribosomal protein L37a-like.	60S ribosomal protein L32.	0.997
LOC102731526	RPL34	A0A2U3XDN5	A0A2U3X717	60S ribosomal protein L37a-like.	60S ribosomal protein L34.	0.999
LOC102731526	RPL35A	A0A2U3XDN5	A0A2U3Y432	60S ribosomal protein L37a-like.	60S ribosomal protein L35a isoform X1.	0.999
LOC102731526	RPL36	A0A2U3XDN5	A0A2U3Z2Z2	60S ribosomal protein L37a-like.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.998
LOC102731526	RPL6	A0A2U3XDN5	A0A2U3XWG4	60S ribosomal protein L37a-like.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
LOC102731526	SRP9	A0A2U3XDN5	A0A2U3YF46	60S ribosomal protein L37a-like.	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.	0.965
LOC102738168	LOC102731526	A0A2U3Z3N3	A0A2U3XDN5	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	60S ribosomal protein L37a-like.	0.999
LOC102738168	LOC102743433	A0A2U3Z3N3	A0A2U3YNX5	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	Ribosomal protein L18-like.	0.999
LOC102738168	LOC102744738	A0A2U3Z3N3	A0A2U3XX88	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	60S ribosomal protein L31 isoform X1.	0.999
LOC102738168	RPL14	A0A2U3Z3N3	A0A2U3Y519	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	60S ribosomal protein L14 isoform X1.	0.999
LOC102738168	RPL18A	A0A2U3Z3N3	A0A2U3Z0X5	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999