STRINGSTRING
PMS1 PMS1 FANCM FANCM RECQL5 RECQL5 NEIL3 NEIL3 ERCC4 ERCC4 CDC7 CDC7 DNA2 DNA2 RFC3 RFC3 FANCL FANCL BRCA2 BRCA2 MUTYH MUTYH RAD54L RAD54L NEIL2 NEIL2 TDRD3 TDRD3 POLE2 POLE2 TIPIN TIPIN DBF4 DBF4 RAD54B RAD54B LOC102732047 LOC102732047 POLA1 POLA1 PALB2 PALB2 APEX1 APEX1 MPG MPG HUS1 HUS1 CLSPN CLSPN GINS3 GINS3 GEN1 GEN1 MSH4 MSH4 LOC102746870 LOC102746870 SLX1A SLX1A MCM4 MCM4 LOC102735468 LOC102735468 RBBP8 RBBP8 RAD50 RAD50 FBXO18 FBXO18 LOC102740480 LOC102740480 RAD51C RAD51C POLE3 POLE3 MCM8 MCM8 REV3L REV3L PCNA PCNA RAD1 RAD1 POLE4 POLE4 POLD2 POLD2 RPA3 RPA3 WDHD1 WDHD1 MSH6 MSH6 MSH2 MSH2 FANCE FANCE POLA2 POLA2 MSH5 MSH5 ORC5 ORC5 ERCC1 ERCC1 LOC102748176 LOC102748176 RAD17 RAD17 FANCD2 FANCD2 OGG1 OGG1 FANCG FANCG TDP2 TDP2 FANCB FANCB EME1 EME1 LOC102731077 LOC102731077 LIG4 LIG4 TIMELESS TIMELESS MCPH1 MCPH1 MCM9 MCM9 RHNO1 RHNO1 NTHL1 NTHL1 MEIOB MEIOB TELO2 TELO2 EME2 EME2 LOC102739117 LOC102739117 RAD51 RAD51 ANKRD32 ANKRD32 XPA XPA LOC102746412 LOC102746412 RFC4 RFC4 POLD4 POLD4 TOP3B TOP3B ATM ATM POLB POLB RMI1 RMI1 NEIL1 NEIL1 PRIMPOL PRIMPOL MCM5 MCM5 DSCC1 DSCC1 XRCC2 XRCC2 POLE POLE MLH3 MLH3 PWWP2A PWWP2A LOC102725847 LOC102725847 RFC2 RFC2 CDC6 CDC6 FANCA FANCA GINS4 GINS4 PMS2 PMS2 EXO1 EXO1 LOC102732340 LOC102732340 MSH3 MSH3 MCM7 MCM7 LOC102730711 LOC102730711 LOC102748019 LOC102748019 LOC102739655 LOC102739655 PPP2R3B PPP2R3B RAD9A RAD9A LOC102744185 LOC102744185 RFC5 RFC5 UBE2T UBE2T LOC102732741 LOC102732741 SNRPB SNRPB LOC102739775 LOC102739775 ATRIP ATRIP LOC102750135 LOC102750135 ORC6 ORC6 LOC102733263 LOC102733263 LOC102733454 LOC102733454 LOC102728609 LOC102728609 SPRTN SPRTN LOC102746675 LOC102746675 LOC102748344 LOC102748344
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PMS1PMS1 protein homolog 1 isoform X1. (929 aa)
FANCMFanconi anemia group M protein. (2050 aa)
RECQL5ATP-dependent DNA helicase Q5. (408 aa)
NEIL3Endonuclease 8-like 3. (651 aa)
ERCC4DNA repair endonuclease XPF. (916 aa)
CDC7Cell division cycle 7-related protein kinase isoform X1. (575 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2. (1061 aa)
RFC3Replication factor C subunit 3. (356 aa)
FANCLE3 ubiquitin-protein ligase FANCL isoform X1. (375 aa)
BRCA2Breast cancer type 2 susceptibility protein homolog. (2818 aa)
MUTYHAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (519 aa)
RAD54LDNA repair and recombination protein RAD54-like. (747 aa)
NEIL2Endonuclease 8-like 2. (334 aa)
TDRD3Tudor domain-containing protein 3-like isoform X1. (651 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (184 aa)
DBF4Protein DBF4 homolog A isoform X1. (676 aa)
RAD54BDNA repair and recombination protein RAD54B isoform X1. (911 aa)
LOC102732047Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (540 aa)
POLA1DNA polymerase. (1423 aa)
PALB2Partner and localizer of BRCA2. (1183 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (317 aa)
MPGDNA-3-methyladenine glycosylase. (267 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
CLSPNClaspin isoform X1. (1340 aa)
GINS3DNA replication complex GINS protein PSF3 isoform X1. (216 aa)
GEN1Flap endonuclease GEN homolog 1. (907 aa)
MSH4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (858 aa)
LOC102746870Chromosome transmission fidelity protein 8 homolog. (117 aa)
SLX1AStructure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (274 aa)
MCM4DNA helicase; Belongs to the MCM family. (863 aa)
LOC102735468Mediator of DNA damage checkpoint protein 1-like. (738 aa)
RBBP8DNA endonuclease RBBP8. (758 aa)
RAD50DNA repair protein RAD50. (973 aa)
FBXO18F-box only protein 18. (972 aa)
LOC102740480DNA replication complex GINS protein PSF2-like. (114 aa)
RAD51CDNA repair protein RAD51 homolog 3-like. (371 aa)
POLE3DNA polymerase epsilon subunit 3. (147 aa)
MCM8DNA helicase MCM8 isoform X1; Belongs to the MCM family. (833 aa)
REV3LDNA polymerase zeta catalytic subunit. (3024 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
RAD1Cell cycle checkpoint protein RAD1. (281 aa)
POLE4DNA polymerase epsilon subunit 4. (116 aa)
POLD2DNA polymerase delta subunit 2. (469 aa)
RPA3Replication protein A 14 kDa subunit. (121 aa)
WDHD1WD repeat and HMG-box DNA-binding protein 1. (1129 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1362 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (951 aa)
FANCEFanconi anemia group E protein. (468 aa)
POLA2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (595 aa)
MSH5mutS protein homolog 5 isoform X2. (832 aa)
ORC5Origin recognition complex subunit 5. (435 aa)
ERCC1DNA excision repair protein ERCC-1. (293 aa)
LOC102748176Fanconi anemia-associated protein of 24 kDa. (224 aa)
RAD17Cell cycle checkpoint protein RAD17. (634 aa)
FANCD2Fanconi anemia group D2 protein. (511 aa)
OGG1N-glycosylase/DNA lyase isoform X2. (334 aa)
FANCGFanconi anemia group G protein. (626 aa)
TDP2tyrosyl-DNA phosphodiesterase 2. (358 aa)
FANCBFanconi anemia group B protein. (867 aa)
EME1Crossover junction endonuclease EME1 isoform X1. (579 aa)
LOC102731077Fanconi anemia group I protein-like. (252 aa)
LIG4DNA ligase. (911 aa)
TIMELESSProtein timeless homolog. (1212 aa)
MCPH1Microcephalin. (851 aa)
MCM9DNA helicase MCM9; Belongs to the MCM family. (898 aa)
RHNO1RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1. (255 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (314 aa)
MEIOBMeiosis-specific with OB domain-containing protein. (300 aa)
TELO2Telomere length regulation protein TEL2 homolog. (822 aa)
EME2Probable crossover junction endonuclease EME2. (324 aa)
LOC102739117Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (187 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (267 aa)
ANKRD32Ankyrin repeat domain-containing protein 32 isoform X1. (1057 aa)
XPADNA repair protein complementing XP-A cells. (273 aa)
LOC102746412Replication protein A 32 kDa subunit-like. (124 aa)
RFC4Replication factor C subunit 4. (363 aa)
POLD4DNA polymerase delta subunit 4. (107 aa)
TOP3BDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (316 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3054 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
RMI1recQ-mediated genome instability protein 1. (638 aa)
NEIL1Endonuclease 8-like 1. (383 aa)
PRIMPOLCoiled-coil domain-containing protein 111. (557 aa)
MCM5DNA helicase; Belongs to the MCM family. (734 aa)
DSCC1Sister chromatid cohesion protein DCC1. (392 aa)
XRCC2DNA repair protein XRCC2. (280 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2277 aa)
MLH3DNA mismatch repair protein Mlh3 isoform X1. (1460 aa)
PWWP2APWWP domain-containing protein 2A. (755 aa)
LOC102725847Uncharacterized protein LOC102725847. (1550 aa)
RFC2Replication factor C subunit 2 isoform X1. (368 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (559 aa)
FANCAFanconi anemia group A protein. (1453 aa)
GINS4DNA replication complex GINS protein SLD5. (162 aa)
PMS2Mismatch repair endonuclease PMS2. (859 aa)
EXO1LOW QUALITY PROTEIN: exonuclease 1. (793 aa)
LOC102732340DNA-(Apurinic or apyrimidinic site) lyase 2-like. (90 aa)
MSH3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1126 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (155 aa)
LOC102730711DNA replication licensing factor MCM2-like. (149 aa)
LOC102748019DNA replication licensing factor MCM3-like; Belongs to the MCM family. (605 aa)
LOC102739655DNA replication licensing factor MCM3-like. (177 aa)
PPP2R3BSerine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta. (596 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (391 aa)
LOC102744185tyrosyl-DNA phosphodiesterase 1-like. (361 aa)
RFC5Replication factor C subunit 5 isoform X1. (340 aa)
UBE2TUbiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (197 aa)
LOC102732741uracil-DNA glycosylase-like. (177 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (231 aa)
LOC102739775Breast cancer type 1 susceptibility protein homolog. (471 aa)
ATRIPATR-interacting protein. (597 aa)
LOC102750135DNA helicase MCM9-like. (234 aa)
ORC6Origin recognition complex subunit 6. (252 aa)
LOC102733263Double-strand break repair protein MRE11A-like. (83 aa)
LOC102733454DNA-(Apurinic or apyrimidinic site) lyase 2-like. (344 aa)
LOC102728609Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (205 aa)
SPRTNsprT-like domain-containing protein Spartan. (484 aa)
LOC102746675DNA primase small subunit-like. (156 aa)
LOC102748344asparagine--tRNA ligase, cytoplasmic-like. (348 aa)
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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