STRINGSTRING
VTN VTN HMGA2 HMGA2 NOG NOG ITGA7 ITGA7 ITGA5 ITGA5 CTR9 CTR9 DKK2 DKK2 COL6A1 COL6A1 MMP14 MMP14 INHBA INHBA LOC102746660 LOC102746660 LOC102731544 LOC102731544 MMP8 MMP8 DUSP1 DUSP1 LEO1 LEO1 LHX1 LHX1 GATA6 GATA6 COL7A1 COL7A1 NR0B1 NR0B1 SOX7 SOX7 EOMES EOMES LOC102730470 LOC102730470 ITGA4 ITGA4 SOX17 SOX17 COL8A1 COL8A1 PAF1 PAF1 MIXL1 MIXL1 NODAL NODAL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VTNVitronectin. (456 aa)
HMGA2High mobility group protein HMGI-C. (109 aa)
NOGNoggin; Inhibitor of bone morphogenetic proteins (BMP) signaling which is required for growth and patterning of the neural tube and somite. (232 aa)
ITGA7Integrin alpha-7; Belongs to the integrin alpha chain family. (1181 aa)
ITGA5Integrin alpha-5; Belongs to the integrin alpha chain family. (1054 aa)
CTR9RNA polymerase-associated protein CTR9 homolog. (723 aa)
DKK2Dickkopf-related protein 2. (259 aa)
COL6A1Collagen alpha-1(VI) chain. (1027 aa)
MMP14Matrix metalloproteinase-14. (582 aa)
INHBAInhibin beta A chain. (424 aa)
LOC102746660RNA polymerase-associated protein CTR9 homolog. (452 aa)
LOC102731544Collagen alpha-1(VII) chain-like. (2351 aa)
MMP8Neutrophil collagenase. (400 aa)
DUSP1Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (367 aa)
LEO1RNA polymerase-associated protein LEO1. (570 aa)
LHX1LIM/homeobox protein Lhx1. (406 aa)
GATA6Transcription factor GATA-6. (287 aa)
COL7A1Collagen alpha-1(VII) chain-like. (532 aa)
NR0B1Nuclear receptor subfamily 0 group B member 1. (393 aa)
SOX7Transcription factor SOX-7. (386 aa)
EOMESEomesodermin homolog isoform X2. (571 aa)
LOC102730470Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (394 aa)
ITGA4Integrin alpha-4; Belongs to the integrin alpha chain family. (1033 aa)
SOX17Transcription factor SOX-17-like. (406 aa)
COL8A1Collagen alpha-1(VIII) chain isoform X1. (744 aa)
PAF1RNA polymerase II-associated factor 1 homolog isoform X2. (528 aa)
MIXL1Homeobox protein MIXL1. (124 aa)
NODALNodal homolog. (348 aa)
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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