(8 nodes) Cerebellar Purkinje cell differentiation network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102726171	LIM domain-binding protein 1-like. (190 aa)
	SKOR2	SKI family transcriptional corepressor 2. (296 aa)
	LHX5	LIM/homeobox protein Lhx5. (402 aa)
	CEND1	Cell cycle exit and neuronal differentiation protein 1. (148 aa)
	LOC102738565	Protein lifeguard 1-like. (378 aa)
	LHX1	LIM/homeobox protein Lhx1. (406 aa)
	LOC102732851	LIM domain-binding protein 1-like. (227 aa)
	FAIM2	Protein lifeguard 2; Belongs to the BI1 family. (315 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHX5	LOC102726171	A0A2U3YET5	A0A2U3XI31	LIM/homeobox protein Lhx5.	LIM domain-binding protein 1-like.	0.453
LHX5	LOC102732851	A0A2U3YET5	A0A2U3XIK9	LIM/homeobox protein Lhx5.	LIM domain-binding protein 1-like.	0.453
LOC102726171	LHX5	A0A2U3XI31	A0A2U3YET5	LIM domain-binding protein 1-like.	LIM/homeobox protein Lhx5.	0.453
LOC102726171	LOC102732851	A0A2U3XI31	A0A2U3XIK9	LIM domain-binding protein 1-like.	LIM domain-binding protein 1-like.	0.922
LOC102732851	LHX5	A0A2U3XIK9	A0A2U3YET5	LIM domain-binding protein 1-like.	LIM/homeobox protein Lhx5.	0.453
LOC102732851	LOC102726171	A0A2U3XIK9	A0A2U3XI31	LIM domain-binding protein 1-like.	LIM domain-binding protein 1-like.	0.922