(8 nodes) Peristalsis network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TIFAB	TRAF-interacting protein with FHA domain-containing protein B. (166 aa)
	P2RX2	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (471 aa)
	TBX3	T-box transcription factor TBX3. (675 aa)
	DLG2	Disks large homolog 2 isoform X1. (905 aa)
	LOC102734167	Neurogenin-1-like. (250 aa)
	P2RX3	P2X purinoceptor 3. (147 aa)
	LOC102727998	P2X purinoceptor 3-like. (281 aa)
	LOC102737253	Glial cell line-derived neurotrophic factor-like isoform X1. (211 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102727998	P2RX2	A0A2U3Z6N1	A0A2U3YPZ4	P2X purinoceptor 3-like.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.863
LOC102727998	P2RX3	A0A2U3Z6N1	A0A2U3XAY6	P2X purinoceptor 3-like.	P2X purinoceptor 3.	0.944
P2RX2	LOC102727998	A0A2U3YPZ4	A0A2U3Z6N1	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor 3-like.	0.863
P2RX2	P2RX3	A0A2U3YPZ4	A0A2U3XAY6	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor 3.	0.864
P2RX3	LOC102727998	A0A2U3XAY6	A0A2U3Z6N1	P2X purinoceptor 3.	P2X purinoceptor 3-like.	0.944
P2RX3	P2RX2	A0A2U3XAY6	A0A2U3YPZ4	P2X purinoceptor 3.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.864