39 items (Leptonychotes weddellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102735830	Sentan-like. (95 aa)
	S100A11	Protein S100; Belongs to the S-100 family. (103 aa)
	S100A10	Protein S100-A10; Belongs to the S-100 family. (97 aa)
	CRNN	Cornulin. (496 aa)
	VPS37C	Vacuolar protein sorting-associated protein 37C. (356 aa)
	LOC102726679	Protein S100-A10-like; Belongs to the S-100 family. (97 aa)
	TNNC1	Troponin C, slow skeletal and cardiac muscles. (161 aa)
	LOC102743708	Annexin. (504 aa)
	S100Z	Protein S100; Belongs to the S-100 family. (97 aa)
	MASP2	LOW QUALITY PROTEIN: mannan-binding lectin serine protease 2; Belongs to the peptidase S1 family. (722 aa)
	PDCD6IP	Programmed cell death 6-interacting protein-like isoform X1. (874 aa)
	LOC102729741	Protein S100; Belongs to the S-100 family. (79 aa)
	LOC102738400	Annexin. (345 aa)
	CABP1	Calcium-binding protein 1. (199 aa)
	PLSCR3	Phospholipid scramblase; May mediate accelerated ATP-independent bidirectional transbilayer migration of phospholipids upon binding calcium ions that results in a loss of phospholipid asymmetry in the plasma membrane. Belongs to the phospholipid scramblase family. (287 aa)
	SLC9A1	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (817 aa)
	SYT2	Synaptotagmin-2. (419 aa)
	SLC24A4	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (513 aa)
	MASP1	Mannan-binding lectin serine protease 1 isoform X1; Belongs to the peptidase S1 family. (728 aa)
	PDCD6	Programmed cell death protein 6 isoform X1. (189 aa)
	LRRC45	Leucine-rich repeat-containing protein 45. (670 aa)
	VPS37D	Vacuolar protein sorting-associated protein 37D. (175 aa)
	TSG101	Tumor susceptibility gene 101 protein isoform X1. (391 aa)
	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2. (258 aa)
	S100A9	Protein S100; Belongs to the S-100 family. (140 aa)
	S100A2	Protein S100; Belongs to the S-100 family. (97 aa)
	LOC102744794	Protein S100; Belongs to the S-100 family. (93 aa)
	S100A1	Protein S100; Belongs to the S-100 family. (94 aa)
	S100A13	Protein S100-A13; Belongs to the S-100 family. (98 aa)
	S100A14	Protein S100-A14; Belongs to the S-100 family. (104 aa)
	S100A12	Protein S100; Belongs to the S-100 family. (92 aa)
	S100A16	Protein S100; Belongs to the S-100 family. (103 aa)
	LOC102749626	Synaptotagmin-1-like. (303 aa)
	ANXA6	Annexin. (673 aa)
	S100B	Protein S100; Belongs to the S-100 family. (92 aa)
	TNNC2	Troponin C, skeletal muscle. (160 aa)
	LOC102741358	Protein S100; Belongs to the S-100 family. (89 aa)
	LOC102733954	Calmodulin-like protein 4-like. (119 aa)
	LOC102734264	Protein S100; Belongs to the S-100 family. (90 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG2	PDCD6	A0A2U3YVA2	A0A2U3YGD0	Alpha-1,3/1,6-mannosyltransferase ALG2.	Programmed cell death protein 6 isoform X1.	0.463
ALG2	PDCD6IP	A0A2U3YVA2	A0A2U3XW84	Alpha-1,3/1,6-mannosyltransferase ALG2.	Programmed cell death 6-interacting protein-like isoform X1.	0.546
ANXA6	LOC102726679	A0A2U3Z111	A0A2U3XGQ2	Annexin.	Protein S100-A10-like; Belongs to the S-100 family.	0.485
ANXA6	LOC102738400	A0A2U3Z111	A0A2U3XZR6	Annexin.	Annexin.	0.414
ANXA6	S100A10	A0A2U3Z111	A0A2U3XAI3	Annexin.	Protein S100-A10; Belongs to the S-100 family.	0.599
ANXA6	S100A11	A0A2U3Z111	A0A2U3XAD1	Annexin.	Protein S100; Belongs to the S-100 family.	0.512
ANXA6	TSG101	A0A2U3Z111	A0A2U3YST3	Annexin.	Tumor susceptibility gene 101 protein isoform X1.	0.596
LOC102726679	ANXA6	A0A2U3XGQ2	A0A2U3Z111	Protein S100-A10-like; Belongs to the S-100 family.	Annexin.	0.485
LOC102726679	LOC102729741	A0A2U3XGQ2	A0A2U3XZ29	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.452
LOC102726679	LOC102734264	A0A2U3XGQ2	A0A2U3Z8N6	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.878
LOC102726679	LOC102738400	A0A2U3XGQ2	A0A2U3XZR6	Protein S100-A10-like; Belongs to the S-100 family.	Annexin.	0.964
LOC102726679	LOC102743708	A0A2U3XGQ2	A0A2U3XUE4	Protein S100-A10-like; Belongs to the S-100 family.	Annexin.	0.563
LOC102726679	S100A11	A0A2U3XGQ2	A0A2U3XAD1	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.618
LOC102726679	S100A13	A0A2U3XGQ2	A0A2U3YWP5	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100-A13; Belongs to the S-100 family.	0.569
LOC102726679	S100A16	A0A2U3XGQ2	A0A2U3YX75	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.788
LOC102726679	S100Z	A0A2U3XGQ2	A0A2U3XVJ1	Protein S100-A10-like; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.489
LOC102729741	LOC102726679	A0A2U3XZ29	A0A2U3XGQ2	Protein S100; Belongs to the S-100 family.	Protein S100-A10-like; Belongs to the S-100 family.	0.452
LOC102729741	LOC102744794	A0A2U3XZ29	A0A2U3YWP3	Protein S100; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.474
LOC102729741	S100A16	A0A2U3XZ29	A0A2U3YX75	Protein S100; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.491
LOC102729741	S100A2	A0A2U3XZ29	A0A2U3YWP1	Protein S100; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.504