STRINGSTRING
COL2A1 COL2A1 SMPD3 SMPD3 HOXA11 HOXA11 NPPC NPPC THBS3 THBS3 RARB RARB ZMPSTE24 ZMPSTE24 LOC102741200 LOC102741200 LOC102737096 LOC102737096 MMP13 MMP13 LOC102733272 LOC102733272 ANXA6 ANXA6 CBS CBS COMP COMP LOC102727345 LOC102727345 SERPINH1 SERPINH1 CER1 CER1 TRPV4 TRPV4 IFT80 IFT80 ATF2 ATF2 RARG RARG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
COL2A1Collagen alpha-1(II) chain isoform X1. (1487 aa)
SMPD3Sphingomyelin phosphodiesterase 3 isoform X1. (653 aa)
HOXA11Homeobox protein Hox-A11. (321 aa)
NPPCC-type natriuretic peptide isoform X1. (126 aa)
THBS3Thrombospondin-3 isoform X1. (956 aa)
RARBRetinoic acid receptor beta. (172 aa)
ZMPSTE24CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (475 aa)
LOC102741200Exostosin-1-like; Belongs to the glycosyltransferase 47 family. (746 aa)
LOC102737096Retinoic acid receptor beta-like. (262 aa)
MMP13Collagenase 3. (470 aa)
LOC102733272Cartilage matrix protein-like. (279 aa)
ANXA6Annexin. (673 aa)
CBSCystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (572 aa)
COMPCartilage oligomeric matrix protein. (728 aa)
LOC102727345Transcription factor SOX-9-like. (282 aa)
SERPINH1Serpin H1 isoform X3; Belongs to the serpin family. (418 aa)
CER1Cerberus. (274 aa)
TRPV4Transient receptor potential cation channel subfamily V member 4; Belongs to the transient receptor (TC 1.A.4) family. (742 aa)
IFT80Intraflagellar transport protein 80 homolog. (777 aa)
ATF2Cyclic AMP-dependent transcription factor ATF-2 isoform X2. (505 aa)
RARGRetinoic acid receptor gamma isoform X1. (486 aa)
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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