(7 nodes) Bronchus development network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102740547	Bone morphogenetic protein 4-like isoform X1. (409 aa)
	LOC102727345	Transcription factor SOX-9-like. (282 aa)
	ADAMTSL2	ADAMTS-like protein 2. (955 aa)
	SPDEF	SAM pointed domain-containing Ets transcription factor. (335 aa)
	SRF	Serum response factor. (508 aa)
	AGR2	Anterior gradient protein 2 homolog isoform X1. (175 aa)
	HOXA5	Homeobox protein Hox-A5. (270 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGR2	SPDEF	A0A2U3XXS6	A0A2U3Y066	Anterior gradient protein 2 homolog isoform X1.	SAM pointed domain-containing Ets transcription factor.	0.580
LOC102727345	LOC102740547	A0A2U3YND0	A0A2U3Z034	Transcription factor SOX-9-like.	Bone morphogenetic protein 4-like isoform X1.	0.577
LOC102740547	LOC102727345	A0A2U3Z034	A0A2U3YND0	Bone morphogenetic protein 4-like isoform X1.	Transcription factor SOX-9-like.	0.577
SPDEF	AGR2	A0A2U3Y066	A0A2U3XXS6	SAM pointed domain-containing Ets transcription factor.	Anterior gradient protein 2 homolog isoform X1.	0.580
SPDEF	SRF	A0A2U3Y066	A0A2U3XZ49	SAM pointed domain-containing Ets transcription factor.	Serum response factor.	0.417
SRF	SPDEF	A0A2U3XZ49	A0A2U3Y066	Serum response factor.	SAM pointed domain-containing Ets transcription factor.	0.417