(9 nodes) Trachea development network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEF1	Lymphoid enhancer-binding factor 1 isoform X1. (399 aa)
	HOXA5	Homeobox protein Hox-A5. (270 aa)
	EDA	ectodysplasin-A isoform X1; Belongs to the tumor necrosis factor family. (390 aa)
	SRF	Serum response factor. (508 aa)
	RARG	Retinoic acid receptor gamma isoform X1. (486 aa)
	MAPK1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (326 aa)
	FOXF1	Forkhead box protein F1. (427 aa)
	LOC102727345	Transcription factor SOX-9-like. (282 aa)
	LOC102740547	Bone morphogenetic protein 4-like isoform X1. (409 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXF1	LOC102727345	A0A2U3YL06	A0A2U3YND0	Forkhead box protein F1.	Transcription factor SOX-9-like.	0.411
FOXF1	LOC102740547	A0A2U3YL06	A0A2U3Z034	Forkhead box protein F1.	Bone morphogenetic protein 4-like isoform X1.	0.458
FOXF1	SRF	A0A2U3YL06	A0A2U3XZ49	Forkhead box protein F1.	Serum response factor.	0.536
LEF1	LOC102727345	A0A2U3X712	A0A2U3YND0	Lymphoid enhancer-binding factor 1 isoform X1.	Transcription factor SOX-9-like.	0.645
LEF1	LOC102740547	A0A2U3X712	A0A2U3Z034	Lymphoid enhancer-binding factor 1 isoform X1.	Bone morphogenetic protein 4-like isoform X1.	0.580
LOC102727345	FOXF1	A0A2U3YND0	A0A2U3YL06	Transcription factor SOX-9-like.	Forkhead box protein F1.	0.411
LOC102727345	LEF1	A0A2U3YND0	A0A2U3X712	Transcription factor SOX-9-like.	Lymphoid enhancer-binding factor 1 isoform X1.	0.645
LOC102727345	LOC102740547	A0A2U3YND0	A0A2U3Z034	Transcription factor SOX-9-like.	Bone morphogenetic protein 4-like isoform X1.	0.577
LOC102740547	FOXF1	A0A2U3Z034	A0A2U3YL06	Bone morphogenetic protein 4-like isoform X1.	Forkhead box protein F1.	0.458
LOC102740547	LEF1	A0A2U3Z034	A0A2U3X712	Bone morphogenetic protein 4-like isoform X1.	Lymphoid enhancer-binding factor 1 isoform X1.	0.580
LOC102740547	LOC102727345	A0A2U3Z034	A0A2U3YND0	Bone morphogenetic protein 4-like isoform X1.	Transcription factor SOX-9-like.	0.577
SRF	FOXF1	A0A2U3XZ49	A0A2U3YL06	Serum response factor.	Forkhead box protein F1.	0.536