(7 nodes) Cortical granule network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CALR	Calreticulin. (417 aa)
	ASTL	Metalloendopeptidase. (461 aa)
	HEXB	Beta-hexosaminidase. (527 aa)
	PADI6	Protein-arginine deiminase type-6. (690 aa)
	LOC102750359	Myosin-9-like; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (163 aa)
	MYH9	Myosin-9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1845 aa)
	NLRP5	LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 5. (1173 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102750359	MYH9	A0A2U3Y9W9	A0A2U3YR71	Myosin-9-like; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin-9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.934
MYH9	LOC102750359	A0A2U3YR71	A0A2U3Y9W9	Myosin-9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin-9-like; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.934
NLRP5	PADI6	A0A2U3YX05	A0A2U3Y232	LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 5.	Protein-arginine deiminase type-6.	0.859
PADI6	NLRP5	A0A2U3Y232	A0A2U3YX05	Protein-arginine deiminase type-6.	LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 5.	0.859