(18 nodes) Protein transporter activity network (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102731850	Tyrosine-protein kinase receptor. (757 aa)
	TOMM40	Mitochondrial import receptor subunit TOM40 homolog isoform X1. (361 aa)
	LOC102743982	LOW QUALITY PROTEIN: zinc-alpha-2-glycoprotein-like; Belongs to the MHC class I family. (313 aa)
	LOC102735345	Mitochondrial import receptor subunit TOM7 homolog. (55 aa)
	TOMM22	Mitochondrial import receptor subunit TOM22 homolog. (145 aa)
	LOC102735720	Mitochondrial import receptor subunit TOM40B-like. (145 aa)
	TMED10	Transmembrane emp24 domain-containing protein 10; Belongs to the EMP24/GP25L family. (94 aa)
	LOC102738323	Mitochondrial import receptor subunit TOM40B-like. (142 aa)
	SEC63	Translocation protein SEC63 homolog. (760 aa)
	LOC102728044	Protein transport protein Sec61 subunit gamma-like. (81 aa)
	ATP13A1	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1206 aa)
	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1. (415 aa)
	LOC102746998	Uncharacterized protein C19orf52 homolog. (260 aa)
	LOC102749673	Insulin-like growth factor 1 receptor-like. (143 aa)
	TIMM17A	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (162 aa)
	TIMM17B	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. (172 aa)
	IGF1R	Insulin-like growth factor 1 receptor-like. (291 aa)
	SEC61G	Protein transport protein Sec61 subunit gamma. (68 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IGF1R	LOC102731850	A0A2U3Y3Q9	A0A2U3Z205	Insulin-like growth factor 1 receptor-like.	Tyrosine-protein kinase receptor.	0.900
IGF1R	LOC102749673	A0A2U3Y3Q9	A0A2U3Y821	Insulin-like growth factor 1 receptor-like.	Insulin-like growth factor 1 receptor-like.	0.899
LOC102728044	LOC102735345	A0A2U3YI73	A0A2U3XDD5	Protein transport protein Sec61 subunit gamma-like.	Mitochondrial import receptor subunit TOM7 homolog.	0.495
LOC102728044	SEC61A1	A0A2U3YI73	A0A2U3Z755	Protein transport protein Sec61 subunit gamma-like.	Protein transport protein Sec61 subunit alpha isoform 1.	0.999
LOC102728044	SEC63	A0A2U3YI73	A0A2U3YJ77	Protein transport protein Sec61 subunit gamma-like.	Translocation protein SEC63 homolog.	0.951
LOC102731850	IGF1R	A0A2U3Z205	A0A2U3Y3Q9	Tyrosine-protein kinase receptor.	Insulin-like growth factor 1 receptor-like.	0.900
LOC102731850	LOC102749673	A0A2U3Z205	A0A2U3Y821	Tyrosine-protein kinase receptor.	Insulin-like growth factor 1 receptor-like.	0.900
LOC102735345	LOC102728044	A0A2U3XDD5	A0A2U3YI73	Mitochondrial import receptor subunit TOM7 homolog.	Protein transport protein Sec61 subunit gamma-like.	0.495
LOC102735345	LOC102735720	A0A2U3XDD5	A0A2U3YUP2	Mitochondrial import receptor subunit TOM7 homolog.	Mitochondrial import receptor subunit TOM40B-like.	0.900
LOC102735345	LOC102738323	A0A2U3XDD5	A0A2U3YL83	Mitochondrial import receptor subunit TOM7 homolog.	Mitochondrial import receptor subunit TOM40B-like.	0.900
LOC102735345	SEC61G	A0A2U3XDD5	A0A2U3XEL4	Mitochondrial import receptor subunit TOM7 homolog.	Protein transport protein Sec61 subunit gamma.	0.495
LOC102735345	TOMM22	A0A2U3XDD5	A0A2U3YUR7	Mitochondrial import receptor subunit TOM7 homolog.	Mitochondrial import receptor subunit TOM22 homolog.	0.999
LOC102735345	TOMM40	A0A2U3XDD5	A0A2U3YXI3	Mitochondrial import receptor subunit TOM7 homolog.	Mitochondrial import receptor subunit TOM40 homolog isoform X1.	0.997
LOC102735720	LOC102735345	A0A2U3YUP2	A0A2U3XDD5	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import receptor subunit TOM7 homolog.	0.900
LOC102735720	LOC102738323	A0A2U3YUP2	A0A2U3YL83	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import receptor subunit TOM40B-like.	0.916
LOC102735720	TIMM17A	A0A2U3YUP2	A0A2U3Y7M1	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.456
LOC102735720	TIMM17B	A0A2U3YUP2	A0A2U3Y3Z2	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.452
LOC102735720	TOMM22	A0A2U3YUP2	A0A2U3YUR7	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import receptor subunit TOM22 homolog.	0.917
LOC102735720	TOMM40	A0A2U3YUP2	A0A2U3YXI3	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import receptor subunit TOM40 homolog isoform X1.	0.792
LOC102738323	LOC102735345	A0A2U3YL83	A0A2U3XDD5	Mitochondrial import receptor subunit TOM40B-like.	Mitochondrial import receptor subunit TOM7 homolog.	0.900