40 items (Leptonychotes weddellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102733739	DNA-directed RNA polymerase II subunit RPB3-like. (189 aa)
	POLR2L	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (142 aa)
	TAF3	Transcription initiation factor TFIID subunit 3. (774 aa)
	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1. (210 aa)
	GTF2H3	General transcription factor IIH subunit 3. (162 aa)
	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
	TAF12	Transcription initiation factor TFIID subunit 12 isoform X1. (161 aa)
	GTF2H5	General transcription factor IIH subunit 5. (71 aa)
	POLR2A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
	GTF2H2	General transcription factor IIH subunit. (395 aa)
	TAF9	Transcription initiation factor TFIID subunit 9-like isoform X1. (265 aa)
	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit. (661 aa)
	GTF2B	Transcription initiation factor IIB. (316 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1. (114 aa)
	TAF11	Transcription initiation factor TFIID subunit 11 isoform X1. (211 aa)
	TBPL2	TATA box-binding protein-like protein 2. (344 aa)
	GTF2F2	General transcription factor IIF subunit 2. (239 aa)
	LOC102726582	DNA-directed RNA polymerase II subunit RPB11-like isoform X1. (117 aa)
	LOC102725801	Uroplakin-3b-like protein-like. (252 aa)
	TAF6	Transcription initiation factor TFIID subunit 6 isoform X1. (677 aa)
	TAF15	TATA-binding protein-associated factor 2N-like. (312 aa)
	GTF2E1	General transcription factor IIE subunit 1. (438 aa)
	GTF2E2	Transcription initiation factor IIE subunit beta. (240 aa)
	TAF7	Transcription initiation factor TFIID subunit 7. (349 aa)
	POLR2I	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	POLR2G	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	MNAT1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	CCNH	cyclin-H-like; Belongs to the cyclin family. (344 aa)
	TAF9B	Transcription initiation factor TFIID subunit 9B. (250 aa)
	TAF13	Transcription initiation factor TFIID subunit 13. (124 aa)
	TAF4	Transcription initiation factor TFIID subunit 4. (668 aa)
	TBP	TATA-box-binding protein. (322 aa)
	GTF2A1L	TFIIA-alpha and beta-like factor isoform X1. (477 aa)
	GTF2H1	General transcription factor IIH subunit 1. (441 aa)
	TBPL1	TATA box-binding protein-like protein 1. (186 aa)
	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit. (782 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
	POLR2C	DNA-directed RNA polymerase II subunit RPB3. (98 aa)

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNH	ERCC2	A0A2U3X8Q5	A0A2U3Y4Q8	cyclin-H-like; Belongs to the cyclin family.	TFIIH basal transcription factor complex helicase XPD subunit.	0.992
CCNH	ERCC3	A0A2U3X8Q5	A0A2U3YTS7	cyclin-H-like; Belongs to the cyclin family.	TFIIH basal transcription factor complex helicase XPB subunit.	0.985
CCNH	GTF2A1L	A0A2U3X8Q5	A0A2U3YM50	cyclin-H-like; Belongs to the cyclin family.	TFIIA-alpha and beta-like factor isoform X1.	0.842
CCNH	GTF2B	A0A2U3X8Q5	A0A2U3Y4G1	cyclin-H-like; Belongs to the cyclin family.	Transcription initiation factor IIB.	0.920
CCNH	GTF2E1	A0A2U3X8Q5	A0A2U3XKM4	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIE subunit 1.	0.990
CCNH	GTF2E2	A0A2U3X8Q5	A0A2U3XJP0	cyclin-H-like; Belongs to the cyclin family.	Transcription initiation factor IIE subunit beta.	0.989
CCNH	GTF2F2	A0A2U3X8Q5	A0A2U3XXU2	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIF subunit 2.	0.883
CCNH	GTF2H1	A0A2U3X8Q5	A0A2U3YSU7	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIH subunit 1.	0.988
CCNH	GTF2H2	A0A2U3X8Q5	A0A2U3Y5C4	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIH subunit.	0.983
CCNH	GTF2H3	A0A2U3X8Q5	A0A2U3Y9S3	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIH subunit 3.	0.996
CCNH	GTF2H5	A0A2U3X8Q5	A0A2U3Y694	cyclin-H-like; Belongs to the cyclin family.	General transcription factor IIH subunit 5.	0.969
CCNH	LOC102725801	A0A2U3X8Q5	A0A2U3XR89	cyclin-H-like; Belongs to the cyclin family.	Uroplakin-3b-like protein-like.	0.787
CCNH	LOC102726582	A0A2U3X8Q5	A0A2U3XRA2	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase II subunit RPB11-like isoform X1.	0.863
CCNH	LOC102733739	A0A2U3X8Q5	A0A2U3Z209	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase II subunit RPB3-like.	0.820
CCNH	MNAT1	A0A2U3X8Q5	A0A2U3XF64	cyclin-H-like; Belongs to the cyclin family.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.999
CCNH	POLR2A	A0A2U3X8Q5	A0A2U3Y5R9	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.964
CCNH	POLR2B	A0A2U3X8Q5	A0A2U3XHG9	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.927
CCNH	POLR2C	A0A2U3X8Q5	A0A2U3YY28	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase II subunit RPB3.	0.820
CCNH	POLR2D	A0A2U3X8Q5	A0A2U3YCS0	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerase II subunit RPB4.	0.900
CCNH	POLR2E	A0A2U3X8Q5	A0A2U3YAS9	cyclin-H-like; Belongs to the cyclin family.	DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1.	0.909