13 items (Tursiops truncatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPATA18	Mitochondria-eating protein. (539 aa)
	SPATC1	Spermatogenesis and centriole associated 1. (510 aa)
	PLEKHH2	Pleckstrin homology domain-containing family H member 2. (1444 aa)
	ENSTTRP00000007089	annotation not available (166 aa)
	PRND	Prion-like protein doppel. (178 aa)
	SPATA6	Spermatogenesis-associated protein 6 isoform X1. (488 aa)
	MARCHF10	Probable E3 ubiquitin-protein ligase MARCH10. (813 aa)
	SPATA19	Spermatogenesis-associated protein 19, mitochondrial. (85 aa)
	TEX43	Testis-expressed sequence 43 protein. (69 aa)
	LEMD1	LEM domain containing 1. (183 aa)
	TEX35	Testis-expressed sequence 35 protein isoform X5. (192 aa)
	FAM170A	Protein FAM170A. (313 aa)
	QRICH1	Glutamine-rich protein 1. (780 aa)

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTTRP00000007089	FAM170A	ENSTTRP00000007089	ENSTTRP00000015654	annotation not available	Protein FAM170A.	0.560
ENSTTRP00000007089	SPATA18	ENSTTRP00000007089	ENSTTRP00000002040	annotation not available	Mitochondria-eating protein.	0.420
ENSTTRP00000007089	SPATA19	ENSTTRP00000007089	ENSTTRP00000012244	annotation not available	Spermatogenesis-associated protein 19, mitochondrial.	0.515
ENSTTRP00000007089	SPATC1	ENSTTRP00000007089	ENSTTRP00000002576	annotation not available	Spermatogenesis and centriole associated 1.	0.511
ENSTTRP00000007089	TEX35	ENSTTRP00000007089	ENSTTRP00000014156	annotation not available	Testis-expressed sequence 35 protein isoform X5.	0.562
ENSTTRP00000007089	TEX43	ENSTTRP00000007089	ENSTTRP00000012811	annotation not available	Testis-expressed sequence 43 protein.	0.562
FAM170A	ENSTTRP00000007089	ENSTTRP00000015654	ENSTTRP00000007089	Protein FAM170A.	annotation not available	0.560
FAM170A	PLEKHH2	ENSTTRP00000015654	ENSTTRP00000006043	Protein FAM170A.	Pleckstrin homology domain-containing family H member 2.	0.554
LEMD1	SPATA19	ENSTTRP00000013260	ENSTTRP00000012244	LEM domain containing 1.	Spermatogenesis-associated protein 19, mitochondrial.	0.666
MARCHF10	QRICH1	ENSTTRP00000011982	ENSTTRP00000016442	Probable E3 ubiquitin-protein ligase MARCH10.	Glutamine-rich protein 1.	0.741
MARCHF10	SPATA18	ENSTTRP00000011982	ENSTTRP00000002040	Probable E3 ubiquitin-protein ligase MARCH10.	Mitochondria-eating protein.	0.493
MARCHF10	SPATA6	ENSTTRP00000011982	ENSTTRP00000011734	Probable E3 ubiquitin-protein ligase MARCH10.	Spermatogenesis-associated protein 6 isoform X1.	0.674
PLEKHH2	FAM170A	ENSTTRP00000006043	ENSTTRP00000015654	Pleckstrin homology domain-containing family H member 2.	Protein FAM170A.	0.554
PRND	SPATA18	ENSTTRP00000008591	ENSTTRP00000002040	Prion-like protein doppel.	Mitochondria-eating protein.	0.531
PRND	SPATA6	ENSTTRP00000008591	ENSTTRP00000011734	Prion-like protein doppel.	Spermatogenesis-associated protein 6 isoform X1.	0.676
QRICH1	MARCHF10	ENSTTRP00000016442	ENSTTRP00000011982	Glutamine-rich protein 1.	Probable E3 ubiquitin-protein ligase MARCH10.	0.741
QRICH1	SPATA6	ENSTTRP00000016442	ENSTTRP00000011734	Glutamine-rich protein 1.	Spermatogenesis-associated protein 6 isoform X1.	0.687
SPATA18	ENSTTRP00000007089	ENSTTRP00000002040	ENSTTRP00000007089	Mitochondria-eating protein.	annotation not available	0.420
SPATA18	MARCHF10	ENSTTRP00000002040	ENSTTRP00000011982	Mitochondria-eating protein.	Probable E3 ubiquitin-protein ligase MARCH10.	0.493
SPATA18	PRND	ENSTTRP00000002040	ENSTTRP00000008591	Mitochondria-eating protein.	Prion-like protein doppel.	0.531