STRINGSTRING
BIVM BIVM WDR48 WDR48 SMC2 SMC2 TSN TSN DMC1 DMC1 PMS2 PMS2 POLA1 POLA1 SUB1 SUB1 RAD51AP2 RAD51AP2 PCBP2 PCBP2 MCM2 MCM2 DHX36 DHX36 HNRNPU HNRNPU RAD18 RAD18 POU4F1 POU4F1 SSBP4 SSBP4 MSH2 MSH2 ZRANB3 ZRANB3 TERF1 TERF1 MCM3 MCM3 MCM6 MCM6 STN1 STN1 RECQL RECQL POT1 POT1 RTF1 RTF1 RAD50 RAD50 NUP35 NUP35 POLR2G POLR2G TERF2 TERF2 TP53 TP53 CTC1 CTC1 SAMHD1 SAMHD1 SWSAP1 SWSAP1 SPRTN SPRTN YBX1 YBX1 FBH1 FBH1 TERF2IP TERF2IP RPA1 RPA1 SMC5 SMC5 CRY2 CRY2 PURB PURB NUCKS1 NUCKS1 HROB HROB BRCA2 BRCA2 SMC4 SMC4 SSBP1 SSBP1 RECQL4 RECQL4 RBBP8 RBBP8 ERCC4 ERCC4 POLR3C POLR3C MSH3 MSH3 RAD51 RAD51 MMS22L MMS22L BLM BLM TDP2 TDP2 SMC6 SMC6 TEN1 TEN1 HMGB2 HMGB2 RAD51B RAD51B RAD51D RAD51D HMCES HMCES FUBP3 FUBP3 TWNK TWNK PCBP3 PCBP3 RAD51AP1 RAD51AP1 MCM10 MCM10 XPC XPC POLR2H POLR2H MEIOB MEIOB PURA PURA MCM7 MCM7 MCM8 MCM8 NEIL3 NEIL3 SSBP3 SSBP3 TDP1 TDP1 LONP1 LONP1 RPA3 RPA3 IGHMBP2 IGHMBP2 MCM9 MCM9 SSBP2 SSBP2 SHOC1 SHOC1 MLH1 MLH1 CDC45 CDC45 SMARCAL1 SMARCAL1 RAD52 RAD52 JCHAIN JCHAIN MCM4 MCM4 ERCC1 ERCC1 TOP3A TOP3A MYEF2 MYEF2 NABP1 NABP1 REXO4 REXO4 DHX9 DHX9 RADX RADX RPA2 RPA2 APTX APTX MCM5 MCM5 NABP2 NABP2 LRPPRC LRPPRC RAD54L RAD54L ERCC5 ERCC5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BIVMBasic immunoglobulin-like variable motif-containing protein isoform X3. (498 aa)
WDR48WD repeat-containing protein 48 isoform X2. (677 aa)
SMC2Structural maintenance of chromosomes protein. (1196 aa)
TSNTranslin isoform X1. (228 aa)
DMC1Meiotic recombination protein DMC1/LIM15 homolog; Belongs to the RecA family. (340 aa)
PMS2Mismatch repair endonuclease PMS2 isoform X4. (863 aa)
POLA1DNA polymerase. (1467 aa)
SUB1Activated RNA polymerase II transcriptional coactivator p15. (103 aa)
RAD51AP2RAD51-associated protein 2. (1114 aa)
PCBP2LOW QUALITY PROTEIN: poly(RC)-binding protein 2-like. (366 aa)
MCM2Minichromosome maintenance complex component 2. (905 aa)
DHX36ATP-dependent RNA helicase DHX36 isoform X1. (1012 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (818 aa)
RAD18E3 ubiquitin-protein ligase RAD18 isoform X2. (493 aa)
POU4F1POU domain protein. (419 aa)
SSBP4Single stranded DNA binding protein 4. (384 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (931 aa)
ZRANB3DNA annealing helicase and endonuclease ZRANB3 isoform X1. (1078 aa)
TERF1Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (406 aa)
MCM3DNA helicase; Belongs to the MCM family. (801 aa)
MCM6DNA helicase; Belongs to the MCM family. (820 aa)
STN1CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (368 aa)
RECQLATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (649 aa)
POT1Protection of telomeres protein 1 isoform X2. (634 aa)
RTF1RNA polymerase-associated protein RTF1 homolog. (710 aa)
RAD50DNA repair protein RAD50. (1267 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (279 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
TERF2Telomeric repeat-binding factor 2 isoform X1. (500 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (387 aa)
CTC1CST complex subunit CTC1. (1156 aa)
SAMHD1Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1. (627 aa)
SWSAP1ATPase SWSAP1. (229 aa)
SPRTNsprT-like domain-containing protein Spartan isoform X1. (426 aa)
YBX1Nuclease-sensitive element-binding protein 1 isoform X1. (316 aa)
FBH1F-box DNA helicase 1 isoform X2. (1074 aa)
TERF2IPTelomeric repeat-binding factor 2-interacting protein 1. (237 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (617 aa)
SMC5Structural maintenance of chromosomes 5. (1050 aa)
CRY2Cryptochrome-2. (593 aa)
PURBTranscriptional activator protein Pur-beta. (304 aa)
NUCKS1Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 isoform X1. (306 aa)
HROBUncharacterized protein C17orf53 homolog. (645 aa)
BRCA2Breast cancer type 2 susceptibility protein. (3307 aa)
SMC4Structural maintenance of chromosomes protein. (1278 aa)
SSBP1Single-stranded DNA-binding protein, mitochondrial isoform X2. (148 aa)
RECQL4ATP-dependent DNA helicase Q4. (1210 aa)
RBBP8DNA endonuclease RBBP8 isoform X2. (846 aa)
ERCC4DNA repair endonuclease XPF. (914 aa)
POLR3CRNA polymerase III subunit C. (534 aa)
MSH3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1122 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (299 aa)
MMS22LProtein MMS22-like isoform X1. (1233 aa)
BLMBloom syndrome protein isoform X1. (1409 aa)
TDP2tyrosyl-DNA phosphodiesterase 2 isoform X2. (362 aa)
SMC6Structural maintenance of chromosomes protein 6 isoform X1. (1097 aa)
TEN1CST complex subunit TEN1. (124 aa)
HMGB2High mobility group protein B2. (209 aa)
RAD51BDNA repair protein RAD51 homolog 2 isoform X2. (345 aa)
RAD51DDNA repair protein RAD51 homolog 4. (305 aa)
HMCESAbasic site processing protein HMCES; Sensor of abasic sites in single-stranded DNA (ssDNA) required to preserve genome integrity by promoting error-free repair of abasic sites. Acts as an enzyme that recognizes and binds abasic sites in ssDNA at replication forks and chemically modifies the lesion by forming a covalent cross-link with DNA. The HMCES DNA-protein cross- link is then degraded by the proteasome. Promotes error-free repair of abasic sites by acting as a 'suicide' enzyme that is degraded, thereby protecting abasic sites from translesion synthesis (TLS) polymerases and endon [...] (350 aa)
FUBP3Far upstream element-binding protein 3 isoform X1. (571 aa)
TWNKTwinkle protein, mitochondrial. (683 aa)
PCBP3poly(RC)-binding protein 3. (361 aa)
RAD51AP1RAD51-associated protein 1 isoform X1. (345 aa)
MCM10Protein MCM10 homolog. (872 aa)
XPCDNA repair protein complementing XP-C cells. (907 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform X1. (442 aa)
PURATranscriptional activator protein Pur-alpha. (325 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (718 aa)
MCM8DNA helicase MCM8 isoform X1; Belongs to the MCM family. (821 aa)
NEIL3Endonuclease 8-like 3 isoform X1. (606 aa)
SSBP3Single-stranded DNA-binding protein 3. (357 aa)
TDP1tyrosyl-DNA phosphodiesterase 1 isoform X1. (601 aa)
LONP1Lon peptidase 1, mitochondrial. (956 aa)
RPA3Replication protein A 14 kDa subunit. (121 aa)
IGHMBP2DNA-binding protein SMUBP-2. (980 aa)
MCM9DNA helicase MCM9 isoform X4; Belongs to the MCM family. (696 aa)
SSBP2Single-stranded DNA-binding protein 2. (369 aa)
SHOC1Uncharacterized protein C9orf84 homolog. (1504 aa)
MLH1DNA mismatch repair protein Mlh1 isoform X1. (689 aa)
CDC45Cell division control protein 45 homolog. (567 aa)
SMARCAL1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (944 aa)
RAD52DNA repair protein RAD52 homolog isoform X5. (409 aa)
JCHAINImmunoglobulin J chain isoform X2. (158 aa)
MCM4DNA helicase; Belongs to the MCM family. (692 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (315 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1003 aa)
MYEF2Myelin expression factor 2 isoform X1. (596 aa)
NABP1SOSS complex subunit B2 isoform X1. (204 aa)
REXO4RNA exonuclease 4. (339 aa)
DHX9ATP-dependent RNA helicase A isoform X1. (1153 aa)
RADXUncharacterized protein CXorf57 homolog isoform X2. (812 aa)
RPA2Replication protein A 32 kDa subunit. (344 aa)
APTXAprataxin isoform X1. (329 aa)
MCM5DNA replication licensing factor MCM5-like. (734 aa)
NABP2SOSS complex subunit B1. (211 aa)
LRPPRCLeucine-rich PPR motif-containing protein, mitochondrial isoform X1. (1393 aa)
RAD54LDNA repair and recombination protein RAD54-like isoform X2. (744 aa)
ERCC5DNA repair protein complementing XP-G cells isoform X1. (1180 aa)
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
Server load: low (20%) [HD]