STRINGSTRING
ETAA1 ETAA1 TRAIP TRAIP ATAD5 ATAD5 KIN KIN POLA1 POLA1 RRM1 RRM1 POLD3 POLD3 POLD2 POLD2 NFIX NFIX PRIMPOL PRIMPOL FANCM FANCM TIMELESS TIMELESS MCM5 MCM5 RPA2 RPA2 POLE2 POLE2 DHX9 DHX9 GRWD1 GRWD1 CCNE1 CCNE1 E4F1 E4F1 MCM4 MCM4 GINS3 GINS3 LIG1 LIG1 RFC2 RFC2 POLG2 POLG2 POLG POLG ORC3 ORC3 SMARCAL1 SMARCAL1 HELB HELB MCMBP MCMBP POLB POLB PCLAF PCLAF NFIC NFIC POLK POLK RECQL4 RECQL4 SSBP1 SSBP1 POLE4 POLE4 TIPIN TIPIN NUCKS1 NUCKS1 BRCA2 BRCA2 MRE11 MRE11 NFIB NFIB RAD51 RAD51 POLE POLE ORC5 ORC5 MMS22L MMS22L RBMS1 RBMS1 MCM10 MCM10 NFIA NFIA SRPK2 SRPK2 WDR18 WDR18 POLQ POLQ FBH1 FBH1 RPA1 RPA1 POLE3 POLE3 BAZ1A BAZ1A PRIM2 PRIM2 RFC5 RFC5 KAT7 KAT7 DSCC1 DSCC1 RFWD3 RFWD3 EME1 EME1 FEN1 FEN1 RFC3 RFC3 RBM48 RBM48 EME2 EME2 PURA PURA SIN3A SIN3A UPF1 UPF1 ZPR1 ZPR1 ING4 ING4 ORC2 ORC2 PIF1 PIF1 NASP NASP RTEL1 RTEL1 SIRT7 SIRT7 WRN WRN MCM7 MCM7 DDX50 DDX50 LIG4 LIG4 TM4SF19 TM4SF19 TOPBP1 TOPBP1 MCM8 MCM8 TBRG1 TBRG1 DTD1 DTD1 NOC3L NOC3L ORC6 ORC6 DNA2 DNA2 RBBP7 RBBP7 RPA3 RPA3 POLN POLN MCM9 MCM9 RFC1 RFC1 RPAIN RPAIN LRWD1 LRWD1 RTF2 RTF2 POLL POLL CDC45 CDC45 ENSTTRP00000014196 ENSTTRP00000014196 TWNK TWNK PCNA PCNA ZNF830 ZNF830 LIG3 LIG3 TICRR TICRR RECQL5 RECQL5 RRM2B RRM2B GEN1 GEN1 DERPC DERPC GINS2 GINS2 SUPT16H SUPT16H CINP CINP GMNN GMNN ORC1 ORC1 BLM BLM DDX21 DDX21 ORC4 ORC4 MGME1 MGME1 CDK9 CDK9 THOC1 THOC1 RMI1 RMI1 RFC4 RFC4 CDC6 CDC6 MUS81 MUS81 SLX4 SLX4 MCM2 MCM2 LOC101316193 LOC101316193 KHDC3L KHDC3L OOEP OOEP ENSTTRP00000001484 ENSTTRP00000001484 RNASEH1 RNASEH1 GINS1 GINS1 CHAF1A CHAF1A ENSTTRP00000001764 ENSTTRP00000001764 SAMHD1 SAMHD1 TONSL TONSL SSRP1 SSRP1 PRIM1 PRIM1 POLD1 POLD1 GMNC GMNC REPIN1 REPIN1 RECQL RECQL WDHD1 WDHD1 GINS4 GINS4 RNASEH2A RNASEH2A BOD1L1 BOD1L1 MCM6 MCM6 MCM3 MCM3 WRNIP1 WRNIP1 ZRANB3 ZRANB3 TTC38 TTC38 ATRX ATRX CDT1 CDT1 DDX23 DDX23 TOP1 TOP1 CCNE2 CCNE2 DONSON DONSON RMI2 RMI2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ETAA1Ewing's tumor-associated antigen 1 isoform X2. (905 aa)
TRAIPE3 ubiquitin-protein ligase TRAIP. (471 aa)
ATAD5ATPase family AAA domain-containing protein 5 isoform X1. (1830 aa)
KINDNA/RNA-binding protein KIN17. (392 aa)
POLA1DNA polymerase. (1467 aa)
RRM1Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (791 aa)
POLD3DNA polymerase delta subunit 3 isoform X1. (465 aa)
POLD2DNA polymerase delta subunit 2. (469 aa)
NFIXNuclear factor 1 X-type. (492 aa)
PRIMPOLDNA-directed primase/polymerase protein isoform X1. (490 aa)
FANCMFanconi anemia group M protein isoform X1. (2045 aa)
TIMELESSProtein timeless homolog isoform X2. (1200 aa)
MCM5DNA replication licensing factor MCM5-like. (734 aa)
RPA2Replication protein A 32 kDa subunit. (344 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
DHX9ATP-dependent RNA helicase A isoform X1. (1153 aa)
GRWD1Glutamate-rich WD repeat-containing protein 1. (446 aa)
CCNE1G1/S-specific cyclin-E1; Belongs to the cyclin family. (350 aa)
E4F1E4F transcription factor 1. (785 aa)
MCM4DNA helicase; Belongs to the MCM family. (692 aa)
GINS3DNA replication complex GINS protein PSF3. (216 aa)
LIG1DNA ligase. (923 aa)
RFC2Replication factor C subunit 2. (316 aa)
POLG2DNA polymerase subunit gamma-2, mitochondrial isoform X2. (482 aa)
POLGDNA polymerase subunit gamma-1. (1229 aa)
ORC3Origin recognition complex subunit 3 isoform X3. (714 aa)
SMARCAL1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (944 aa)
HELBDNA helicase B. (1045 aa)
MCMBPMini-chromosome maintenance complex-binding protein isoform X1. (642 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
PCLAFPCNA-associated factor. (96 aa)
NFICNuclear factor I C. (496 aa)
POLKDNA polymerase kappa. (871 aa)
RECQL4ATP-dependent DNA helicase Q4. (1210 aa)
SSBP1Single-stranded DNA-binding protein, mitochondrial isoform X2. (148 aa)
POLE4LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 4. (116 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (297 aa)
NUCKS1Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 isoform X1. (306 aa)
BRCA2Breast cancer type 2 susceptibility protein. (3307 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (707 aa)
NFIBNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (570 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (299 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2262 aa)
ORC5Origin recognition complex subunit 5 isoform X1. (376 aa)
MMS22LProtein MMS22-like isoform X1. (1233 aa)
RBMS1RNA-binding motif, single-stranded-interacting protein 1 isoform X8. (381 aa)
MCM10Protein MCM10 homolog. (872 aa)
NFIANuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (532 aa)
SRPK2SRSF protein kinase 2 isoform X7. (691 aa)
WDR18WD repeat domain 18. (418 aa)
POLQDNA polymerase theta. (2722 aa)
FBH1F-box DNA helicase 1 isoform X2. (1074 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (617 aa)
POLE3DNA polymerase epsilon subunit 3. (147 aa)
BAZ1ABromodomain adjacent to zinc finger domain protein 1A isoform X2. (1549 aa)
PRIM2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (347 aa)
RFC5Replication factor C subunit 5. (341 aa)
KAT7Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (611 aa)
DSCC1Sister chromatid cohesion protein DCC1 isoform X1. (392 aa)
RFWD3E3 ubiquitin-protein ligase RFWD3. (724 aa)
EME1Crossover junction endonuclease EME1 isoform X1. (591 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
RFC3Replication factor C subunit 3 isoform X2. (355 aa)
RBM48RNA-binding protein 48 isoform X2. (362 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (420 aa)
PURATranscriptional activator protein Pur-alpha. (325 aa)
SIN3APaired amphipathic helix protein Sin3a isoform X1. (1211 aa)
UPF1Regulator of nonsense transcripts 1 isoform X2. (1112 aa)
ZPR1Zinc finger protein ZPR1. (459 aa)
ING4Inhibitor of growth protein. (247 aa)
ORC2Origin recognition complex subunit 2 isoform X1. (496 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. Efficiently unwinds G-quadruplex (G4) DNA structures and forked RNA-DNA hybrids. Resolves G4 structures, preventing replication pausing and double-strand breaks (DSBs) at G4 motifs. Involved in the maintenance of telomeric DNA. Inhibits telomere elongation, de novo telomere formation and telomere addition to DSBs via catalytic inhibition of telomerase. Reduces the processivity of telomerase by displacing active telomerase from DNA [...] (700 aa)
NASPNuclear autoantigenic sperm protein isoform X4. (788 aa)
RTEL1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1377 aa)
SIRT7NAD-dependent protein deacetylase sirtuin-7. (400 aa)
WRNWerner syndrome ATP-dependent helicase isoform X2. (1352 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (718 aa)
DDX50ATP-dependent RNA helicase DDX50. (736 aa)
LIG4DNA ligase. (911 aa)
TM4SF19Transmembrane 4 L6 family member 19. (208 aa)
TOPBP1DNA topoisomerase 2-binding protein 1-like isoform X2. (1520 aa)
MCM8DNA helicase MCM8 isoform X1; Belongs to the MCM family. (821 aa)
TBRG1Transforming growth factor beta regulator 1 isoform X1. (409 aa)
DTD1D-aminoacyl-tRNA deacylase. (209 aa)
NOC3LNucleolar complex protein 3 homolog. (800 aa)
ORC6Origin recognition complex subunit 6. (252 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1. (1059 aa)
RBBP7Histone-binding protein RBBP7 isoform X1. (469 aa)
RPA3Replication protein A 14 kDa subunit. (121 aa)
POLNDNA polymerase nu. (895 aa)
MCM9DNA helicase MCM9 isoform X4; Belongs to the MCM family. (696 aa)
RFC1Replication factor C subunit 1-like isoform X1. (1149 aa)
RPAINRPA-interacting protein isoform X2. (219 aa)
LRWD1Leucine-rich repeat and WD repeat-containing protein 1. (647 aa)
RTF2Protein RTF2 homolog isoform X1. (306 aa)
POLLDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (575 aa)
CDC45Cell division control protein 45 homolog. (567 aa)
ENSTTRP00000014196annotation not available (422 aa)
TWNKTwinkle protein, mitochondrial. (683 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (187 aa)
ZNF830Zinc finger protein 830. (371 aa)
LIG3DNA ligase. (1000 aa)
TICRRTreslin. (1890 aa)
RECQL5ATP-dependent DNA helicase Q5 isoform X2. (946 aa)
RRM2BRibonucleoside-diphosphate reductase subunit M2 B. (345 aa)
GEN1Flap endonuclease GEN homolog 1. (907 aa)
DERPCLOW QUALITY PROTEIN: chromosome transmission fidelity protein 8 homolog. (450 aa)
GINS2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (185 aa)
SUPT16HFACT complex subunit SPT16 isoform X1. (1046 aa)
CINPCyclin-dependent kinase 2-interacting protein. (212 aa)
GMNNGeminin. (210 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (828 aa)
BLMBloom syndrome protein isoform X1. (1409 aa)
DDX21Nucleolar RNA helicase 2. (783 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (436 aa)
MGME1Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family. (343 aa)
CDK9Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily. (487 aa)
THOC1THO complex subunit 1. (655 aa)
RMI1recQ-mediated genome instability protein 1 isoform X1. (626 aa)
RFC4Replication factor C subunit 4. (364 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (499 aa)
MUS81MUS81 structure-specific endonuclease subunit. (547 aa)
SLX4Structure-specific endonuclease subunit SLX4. (1815 aa)
MCM2Minichromosome maintenance complex component 2. (905 aa)
LOC101316193DNA polymerase alpha subunit B isoform X2. (597 aa)
KHDC3LKHDC3-like protein. (218 aa)
OOEPOocyte-expressed protein homolog isoform X2. (140 aa)
ENSTTRP00000001484annotation not available (69 aa)
RNASEH1Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (286 aa)
GINS1DNA replication complex GINS protein PSF1 isoform X3. (196 aa)
CHAF1AChromatin assembly factor 1 subunit A. (940 aa)
ENSTTRP00000001764annotation not available (98 aa)
SAMHD1Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1. (627 aa)
TONSLTonsoku-like protein. (1206 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (708 aa)
PRIM1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (411 aa)
POLD1LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit. (1125 aa)
GMNCGeminin coiled-coil domain-containing protein 1. (335 aa)
REPIN1Replication initiator 1 isoform X3. (560 aa)
RECQLATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (649 aa)
WDHD1WD repeat and HMG-box DNA-binding protein 1 isoform X1. (1083 aa)
GINS4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (222 aa)
RNASEH2ARibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (213 aa)
BOD1L1Biorientation of chromosomes in cell division protein 1-like 1 isoform X1. (2988 aa)
MCM6DNA helicase; Belongs to the MCM family. (820 aa)
MCM3DNA helicase; Belongs to the MCM family. (801 aa)
WRNIP1ATPase WRNIP1 isoform X2. (391 aa)
ZRANB3DNA annealing helicase and endonuclease ZRANB3 isoform X1. (1078 aa)
TTC38Tetratricopeptide repeat protein 38. (458 aa)
ATRXTranscriptional regulator ATRX isoform X3. (2518 aa)
CDT1DNA replication factor Cdt1. (372 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (818 aa)
TOP1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (841 aa)
CCNE2G1/S-specific cyclin-E2; Belongs to the cyclin family. (404 aa)
DONSONProtein downstream neighbor of Son isoform X1. (457 aa)
RMI2recQ-mediated genome instability protein 2. (77 aa)
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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