(13 nodes) P-body assembly network (Tursiops truncatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DDX6	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (483 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (285 aa)
	LSM14A	Protein LSM14 homolog A isoform X7. (464 aa)
	NOCT	Nocturnin. (383 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter isoform X2. (980 aa)
	LIMD1	LIM domain-containing protein 1 isoform X1. (654 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	PATL1	Protein PAT1 homolog 1 isoform X2. (655 aa)
	RC3H1	Roquin-1 isoform X1. (1135 aa)
	EDC3	Enhancer of mRNA-decapping protein 3. (506 aa)
	C19orf54	Chromosome 19 open reading frame 54. (350 aa)
	ENSTTRP00000006136	annotation not available (91 aa)
	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1. (4640 aa)

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C19orf54	DDX6	ENSTTRP00000006795	ENSTTRP00000004057	Chromosome 19 open reading frame 54.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.798
C19orf54	EDC3	ENSTTRP00000006795	ENSTTRP00000007562	Chromosome 19 open reading frame 54.	Enhancer of mRNA-decapping protein 3.	0.747
C19orf54	ENSTTRP00000006136	ENSTTRP00000006795	ENSTTRP00000006136	Chromosome 19 open reading frame 54.	annotation not available	0.965
C19orf54	PATL1	ENSTTRP00000006795	ENSTTRP00000008905	Chromosome 19 open reading frame 54.	Protein PAT1 homolog 1 isoform X2.	0.951
CNOT7	DDX6	ENSTTRP00000011922	ENSTTRP00000004057	CCR4-NOT transcription complex subunit 7.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.943
CNOT7	NOCT	ENSTTRP00000011922	ENSTTRP00000012866	CCR4-NOT transcription complex subunit 7.	Nocturnin.	0.780
CNOT7	PATL1	ENSTTRP00000011922	ENSTTRP00000008905	CCR4-NOT transcription complex subunit 7.	Protein PAT1 homolog 1 isoform X2.	0.891
CNOT7	RC3H1	ENSTTRP00000011922	ENSTTRP00000008127	CCR4-NOT transcription complex subunit 7.	Roquin-1 isoform X1.	0.628
DDX6	C19orf54	ENSTTRP00000004057	ENSTTRP00000006795	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Chromosome 19 open reading frame 54.	0.798
DDX6	CNOT7	ENSTTRP00000004057	ENSTTRP00000011922	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	CCR4-NOT transcription complex subunit 7.	0.943
DDX6	EDC3	ENSTTRP00000004057	ENSTTRP00000007562	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Enhancer of mRNA-decapping protein 3.	0.999
DDX6	EIF4ENIF1	ENSTTRP00000004057	ENSTTRP00000009757	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E transporter isoform X2.	0.958
DDX6	ENSTTRP00000006136	ENSTTRP00000004057	ENSTTRP00000006136	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	annotation not available	0.950
DDX6	LSM14A	ENSTTRP00000004057	ENSTTRP00000012216	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Protein LSM14 homolog A isoform X7.	0.976
DDX6	LSM3	ENSTTRP00000004057	ENSTTRP00000010618	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.798
DDX6	NOCT	ENSTTRP00000004057	ENSTTRP00000012866	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Nocturnin.	0.799
DDX6	PATL1	ENSTTRP00000004057	ENSTTRP00000008905	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Protein PAT1 homolog 1 isoform X2.	0.998
EDC3	C19orf54	ENSTTRP00000007562	ENSTTRP00000006795	Enhancer of mRNA-decapping protein 3.	Chromosome 19 open reading frame 54.	0.747
EDC3	DDX6	ENSTTRP00000007562	ENSTTRP00000004057	Enhancer of mRNA-decapping protein 3.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.999
EDC3	ENSTTRP00000006136	ENSTTRP00000007562	ENSTTRP00000006136	Enhancer of mRNA-decapping protein 3.	annotation not available	0.987