STRINGSTRING
DHX35 DHX35 HNRNPR HNRNPR MTREX MTREX SART1 SART1 DDX5 DDX5 RBM8A RBM8A DHX38 DHX38 SF3A1 SF3A1 SF3B6 SF3B6 PRPF6 PRPF6 RBM22 RBM22 SRRM2 SRRM2 ISY1 ISY1 SNRNP40 SNRNP40 AQR AQR PPIE PPIE DDX41 DDX41 ZCCHC8 ZCCHC8 WDR25 WDR25 DHX8 DHX8 PPIL2 PPIL2 EIF4A2 EIF4A2 PNN PNN SF3B2 SF3B2 SNRPD2 SNRPD2 LSM2 LSM2 SF3A3 SF3A3 SNRPG SNRPG MAGOH MAGOH EIF4A3 EIF4A3 CRNKL1 CRNKL1 SNW1 SNW1 SRRM1 SRRM1 TFIP11 TFIP11 SF3A2 SF3A2 PLRG1 PLRG1 PPIL1 PPIL1 SNRPD1 SNRPD1 BUD31 BUD31 RBMXL2 RBMXL2 SF3B1 SF3B1 FRG1 FRG1 SYF2 SYF2 XAB2 XAB2 SYNCRIP SYNCRIP HNRNPA1 HNRNPA1 SNRPA1 SNRPA1 DDX23 DDX23 PABPC1 PABPC1 CWC15 CWC15 SNRNP200 SNRNP200 HNRNPU HNRNPU WDR83 WDR83 LSM7 LSM7 CACTIN CACTIN SF3B3 SF3B3 SNRPD3 SNRPD3 SNRPF SNRPF CDC40 CDC40 RBM44 RBM44 EFTUD2 EFTUD2 SNRPB2 SNRPB2 PPWD1 PPWD1 RALY RALY ESS2 ESS2 PRPF8 PRPF8 CDC5L CDC5L C19orf54 C19orf54 SRSF1 SRSF1 RBMX RBMX PRPF4B PRPF4B PRPF19 PRPF19 GPATCH1 GPATCH1 CWC22 CWC22 PPIL3 PPIL3 SLU7 SLU7 LSM3 LSM3 ENSTTRP00000010397 ENSTTRP00000010397 SNRPN SNRPN BCAS2 BCAS2 CWC27 CWC27
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DHX35Probable ATP-dependent RNA helicase DHX35 isoform X1. (702 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R isoform X1. (636 aa)
MTREXSuperkiller viralicidic activity 2-like 2. (1038 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (797 aa)
DDX5Probable ATP-dependent RNA helicase DDX5. (614 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (151 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1. (1226 aa)
SF3A1Splicing factor 3A subunit 1. (794 aa)
SF3B6Splicing factor 3B subunit 6. (115 aa)
PRPF6pre-mRNA-processing factor 6. (940 aa)
RBM22pre-mRNA-splicing factor RBM22 isoform X2. (420 aa)
SRRM2Serine/arginine repetitive matrix protein 2 isoform X1. (2733 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (282 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1. (358 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1482 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E. (312 aa)
DDX41Probable ATP-dependent RNA helicase DDX41 isoform X1. (500 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8 isoform X1. (702 aa)
WDR25WD repeat-containing protein 25 isoform X1. (543 aa)
DHX8ATP-dependent RNA helicase DHX8. (1211 aa)
PPIL2Peptidyl-prolyl cis-trans isomerase-like 2 isoform X2. (521 aa)
EIF4A2Eukaryotic translation initiation factor 4A2. (407 aa)
PNNPinin. (705 aa)
SF3B2Splicing factor 3B subunit 2-like isoform X2. (895 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
SF3A3Splicing factor 3A subunit 3. (500 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (65 aa)
MAGOHMago homolog, exon junction complex subunit. (147 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (354 aa)
CRNKL1Crooked neck-like protein 1 isoform X1. (780 aa)
SNW1SNW domain-containing protein 1. (536 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (901 aa)
TFIP11Tuftelin interacting protein 11. (834 aa)
SF3A2Splicing factor 3a subunit 2. (464 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (115 aa)
BUD31Protein BUD31 homolog isoform X2. (144 aa)
RBMXL2RNA-binding motif protein, X-linked-like-2. (383 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1304 aa)
FRG1Protein FRG1. (258 aa)
SYF2pre-mRNA-splicing factor SYF2. (244 aa)
XAB2pre-mRNA-splicing factor SYF1. (826 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q isoform X1. (623 aa)
HNRNPA1Heterogeneous nuclear ribonucleoprotein A1. (366 aa)
SNRPA1U2 small nuclear ribonucleoprotein A' isoform X2. (255 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (818 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (620 aa)
CWC15Spliceosome-associated protein CWC15 homolog. (229 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2135 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (818 aa)
WDR83WD repeat domain-containing protein 83. (315 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (119 aa)
CACTINCactin. (746 aa)
SF3B3Splicing factor 3B subunit 3. (1214 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
CDC40pre-mRNA-processing factor 17. (578 aa)
RBM44RNA-binding protein 44. (1048 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'. (225 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1. (644 aa)
RALYRNA-binding protein Raly isoform X2. (300 aa)
ESS2Protein DGCR14 isoform X4. (475 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
CDC5LCell division cycle 5-like protein isoform X1. (801 aa)
C19orf54Chromosome 19 open reading frame 54. (350 aa)
SRSF1Serine/arginine-rich splicing factor 1. (183 aa)
RBMXRNA-binding motif protein, X chromosome. (391 aa)
PRPF4BSerine/threonine-protein kinase PRP4 homolog isoform X3. (1009 aa)
PRPF19pre-mRNA-processing factor 19. (503 aa)
GPATCH1G patch domain-containing protein 1 isoform X1. (933 aa)
CWC22pre-mRNA-splicing factor CWC22 homolog. (900 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (129 aa)
SLU7pre-mRNA-splicing factor SLU7 isoform X2. (528 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ENSTTRP00000010397annotation not available (247 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (271 aa)
BCAS2pre-mRNA-splicing factor SPF27. (220 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (459 aa)
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin
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