(10 nodes) Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Tursiops truncatus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PABPC1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (620 aa)
	EIF4A3	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (354 aa)
	DHX34	Probable ATP-dependent RNA helicase DHX34. (1139 aa)
	SECISBP2	Selenocysteine insertion sequence-binding protein 2 isoform X3. (847 aa)
	CASC3	Protein CASC3. (604 aa)
	APOBEC1	C->U-editing enzyme APOBEC-1 isoform X2. (187 aa)
	A1CF	APOBEC1 complementation factor isoform X3. (593 aa)
	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B isoform X3. (299 aa)
	RBM8A	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (151 aa)
	NBAS	Neuroblastoma-amplified sequence. (2365 aa)

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1CF	APOBEC1	ENSTTRP00000012517	ENSTTRP00000013291	APOBEC1 complementation factor isoform X3.	C->U-editing enzyme APOBEC-1 isoform X2.	0.892
APOBEC1	A1CF	ENSTTRP00000013291	ENSTTRP00000012517	C->U-editing enzyme APOBEC-1 isoform X2.	APOBEC1 complementation factor isoform X3.	0.892
CASC3	DHX34	ENSTTRP00000016019	ENSTTRP00000002124	Protein CASC3.	Probable ATP-dependent RNA helicase DHX34.	0.661
CASC3	EIF4A3	ENSTTRP00000016019	ENSTTRP00000000481	Protein CASC3.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.999
CASC3	PABPC1	ENSTTRP00000016019	ENSTTRP00000004419	Protein CASC3.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.521
CASC3	RBM8A	ENSTTRP00000016019	ENSTTRP00000008592	Protein CASC3.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
DHX34	CASC3	ENSTTRP00000002124	ENSTTRP00000016019	Probable ATP-dependent RNA helicase DHX34.	Protein CASC3.	0.661
DHX34	EIF4A3	ENSTTRP00000002124	ENSTTRP00000000481	Probable ATP-dependent RNA helicase DHX34.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.837
DHX34	NBAS	ENSTTRP00000002124	ENSTTRP00000005111	Probable ATP-dependent RNA helicase DHX34.	Neuroblastoma-amplified sequence.	0.504
DHX34	RBM8A	ENSTTRP00000002124	ENSTTRP00000008592	Probable ATP-dependent RNA helicase DHX34.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.636
EIF4A3	CASC3	ENSTTRP00000000481	ENSTTRP00000016019	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Protein CASC3.	0.999
EIF4A3	DHX34	ENSTTRP00000000481	ENSTTRP00000002124	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DHX34.	0.837
EIF4A3	HNRNPAB	ENSTTRP00000000481	ENSTTRP00000010055	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein A/B isoform X3.	0.515
EIF4A3	PABPC1	ENSTTRP00000000481	ENSTTRP00000004419	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.833
EIF4A3	RBM8A	ENSTTRP00000000481	ENSTTRP00000008592	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
EIF4A3	SECISBP2	ENSTTRP00000000481	ENSTTRP00000003138	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Selenocysteine insertion sequence-binding protein 2 isoform X3.	0.684
HNRNPAB	EIF4A3	ENSTTRP00000010055	ENSTTRP00000000481	Heterogeneous nuclear ribonucleoprotein A/B isoform X3.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.515
HNRNPAB	PABPC1	ENSTTRP00000010055	ENSTTRP00000004419	Heterogeneous nuclear ribonucleoprotein A/B isoform X3.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.619
NBAS	DHX34	ENSTTRP00000005111	ENSTTRP00000002124	Neuroblastoma-amplified sequence.	Probable ATP-dependent RNA helicase DHX34.	0.504
PABPC1	CASC3	ENSTTRP00000004419	ENSTTRP00000016019	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Protein CASC3.	0.521