(11 nodes) (2023) Biomimetic approaches and materials in restorative and regenerative dentistry: review article. network (Tursiops truncatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BMP2	Bone morphogenetic protein 2. (388 aa)
	DMP1	Dentin matrix acidic phosphoprotein 1. (517 aa)
	BMP5	Bone morphogenetic protein 5 isoform X2. (454 aa)
	ENAM	Enamelin. (1083 aa)
	AMTN	Amelotin. (215 aa)
	AMBN	Ameloblastin. (419 aa)
	BMP4	Bone morphogenetic protein 4. (407 aa)
	TGFB2	Transforming growth factor beta; Belongs to the TGF-beta family. (416 aa)
	TGFB3	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	BMP7	Bone morphogenetic protein 7 isoform X2. (431 aa)
	IGF1	Insulin-like growth factor 1 transcript variant X4. (194 aa)

Your Current Organism:

Tursiops truncatus

NCBI taxonomy Id: 9739
Other names: Atlantic bottlenose dolphin, T. truncatus, bottle-nosed dolphin, common bottlenose dolphin

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMBN	AMTN	ENSTTRP00000008211	ENSTTRP00000008199	Ameloblastin.	Amelotin.	0.843
AMBN	DMP1	ENSTTRP00000008211	ENSTTRP00000002757	Ameloblastin.	Dentin matrix acidic phosphoprotein 1.	0.606
AMBN	ENAM	ENSTTRP00000008211	ENSTTRP00000007943	Ameloblastin.	Enamelin.	0.911
AMTN	AMBN	ENSTTRP00000008199	ENSTTRP00000008211	Amelotin.	Ameloblastin.	0.843
AMTN	DMP1	ENSTTRP00000008199	ENSTTRP00000002757	Amelotin.	Dentin matrix acidic phosphoprotein 1.	0.738
AMTN	ENAM	ENSTTRP00000008199	ENSTTRP00000007943	Amelotin.	Enamelin.	0.884
BMP2	BMP4	ENSTTRP00000002383	ENSTTRP00000008787	Bone morphogenetic protein 2.	Bone morphogenetic protein 4.	0.899
BMP2	BMP5	ENSTTRP00000002383	ENSTTRP00000005374	Bone morphogenetic protein 2.	Bone morphogenetic protein 5 isoform X2.	0.616
BMP2	BMP7	ENSTTRP00000002383	ENSTTRP00000014836	Bone morphogenetic protein 2.	Bone morphogenetic protein 7 isoform X2.	0.719
BMP2	DMP1	ENSTTRP00000002383	ENSTTRP00000002757	Bone morphogenetic protein 2.	Dentin matrix acidic phosphoprotein 1.	0.537
BMP2	IGF1	ENSTTRP00000002383	ENSTTRP00000016330	Bone morphogenetic protein 2.	Insulin-like growth factor 1 transcript variant X4.	0.703
BMP2	TGFB2	ENSTTRP00000002383	ENSTTRP00000012883	Bone morphogenetic protein 2.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.431
BMP4	BMP2	ENSTTRP00000008787	ENSTTRP00000002383	Bone morphogenetic protein 4.	Bone morphogenetic protein 2.	0.899
BMP4	BMP5	ENSTTRP00000008787	ENSTTRP00000005374	Bone morphogenetic protein 4.	Bone morphogenetic protein 5 isoform X2.	0.739
BMP4	BMP7	ENSTTRP00000008787	ENSTTRP00000014836	Bone morphogenetic protein 4.	Bone morphogenetic protein 7 isoform X2.	0.863
BMP4	IGF1	ENSTTRP00000008787	ENSTTRP00000016330	Bone morphogenetic protein 4.	Insulin-like growth factor 1 transcript variant X4.	0.555
BMP5	BMP2	ENSTTRP00000005374	ENSTTRP00000002383	Bone morphogenetic protein 5 isoform X2.	Bone morphogenetic protein 2.	0.616
BMP5	BMP4	ENSTTRP00000005374	ENSTTRP00000008787	Bone morphogenetic protein 5 isoform X2.	Bone morphogenetic protein 4.	0.739
BMP7	BMP2	ENSTTRP00000014836	ENSTTRP00000002383	Bone morphogenetic protein 7 isoform X2.	Bone morphogenetic protein 2.	0.719
BMP7	BMP4	ENSTTRP00000014836	ENSTTRP00000008787	Bone morphogenetic protein 7 isoform X2.	Bone morphogenetic protein 4.	0.863