(8 nodes) Primitive hemopoiesis network (Delphinapterus leucas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZFPM1	Zinc finger protein ZFPM1 isoform X1. (1069 aa)
	STK3	Serine/threonine-protein kinase 3. (491 aa)
	STK4	Serine/threonine-protein kinase 4 isoform X1. (487 aa)
	GATA1	Erythroid transcription factor isoform X1. (426 aa)
	LOC111164034	LOW QUALITY PROTEIN: THO complex subunit 5 homolog. (625 aa)
	HSCB	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial isoform X1. (235 aa)
	THOC5	THO complex subunit 5 homolog isoform X1. (683 aa)
	TAL1	T-cell acute lymphocytic leukemia protein 1 isoform X1. (328 aa)

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA1	TAL1	A0A2Y9MEW3	A0A2Y9NIS6	Erythroid transcription factor isoform X1.	T-cell acute lymphocytic leukemia protein 1 isoform X1.	0.949
GATA1	ZFPM1	A0A2Y9MEW3	A0A2Y9NUI0	Erythroid transcription factor isoform X1.	Zinc finger protein ZFPM1 isoform X1.	0.974
LOC111164034	THOC5	A0A2Y9LUQ5	A0A2Y9LA03	LOW QUALITY PROTEIN: THO complex subunit 5 homolog.	THO complex subunit 5 homolog isoform X1.	0.900
STK3	STK4	A0A2Y9PD37	A0A2Y9PXE7	Serine/threonine-protein kinase 3.	Serine/threonine-protein kinase 4 isoform X1.	0.901
STK4	STK3	A0A2Y9PXE7	A0A2Y9PD37	Serine/threonine-protein kinase 4 isoform X1.	Serine/threonine-protein kinase 3.	0.901
TAL1	GATA1	A0A2Y9NIS6	A0A2Y9MEW3	T-cell acute lymphocytic leukemia protein 1 isoform X1.	Erythroid transcription factor isoform X1.	0.949
THOC5	LOC111164034	A0A2Y9LA03	A0A2Y9LUQ5	THO complex subunit 5 homolog isoform X1.	LOW QUALITY PROTEIN: THO complex subunit 5 homolog.	0.900
ZFPM1	GATA1	A0A2Y9NUI0	A0A2Y9MEW3	Zinc finger protein ZFPM1 isoform X1.	Erythroid transcription factor isoform X1.	0.974