32 items (Delphinapterus leucas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMARCA1	Probable global transcription activator SNF2L1 isoform X1. (1070 aa)
	ERCC6	DNA excision repair protein ERCC-6. (1485 aa)
	ERCC6L	DNA excision repair protein ERCC-6-like. (1249 aa)
	BTAF1	TATA-binding protein-associated factor 172 isoform X1. (1849 aa)
	HELLS	Lymphoid-specific helicase. (837 aa)
	SMARCAL1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (951 aa)
	SMARCA2	Probable global transcription activator SNF2L2 isoform X1. (1597 aa)
	RAD54L2	Helicase ARIP4 isoform X1. (1465 aa)
	ZRANB3	DNA annealing helicase and endonuclease ZRANB3 isoform X1. (1077 aa)
	CHD4	chromodomain-helicase-DNA-binding protein 4 isoform X1. (1940 aa)
	RAD54B	DNA repair and recombination protein RAD54B isoform X1. (909 aa)
	RAD54L	DNA repair and recombination protein RAD54-like isoform X1. (756 aa)
	EP400	E1A-binding protein p400 isoform X1. (3133 aa)
	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1052 aa)
	CHD5	chromodomain-helicase-DNA-binding protein 5 isoform X1. (1954 aa)
	CHD3	chromodomain-helicase-DNA-binding protein 3 isoform X1. (2155 aa)
	CHD2	chromodomain-helicase-DNA-binding protein 2 isoform X1. (1862 aa)
	CHD7	chromodomain-helicase-DNA-binding protein 7 isoform X1. (3050 aa)
	CHD6	chromodomain-helicase-DNA-binding protein 6. (2720 aa)
	CHD1	chromodomain-helicase-DNA-binding protein 1 isoform X1. (1798 aa)
	CHD8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2590 aa)
	INO80	DNA helicase INO80 isoform X1. (1563 aa)
	SRCAP	Helicase SRCAP isoform X1. (3238 aa)
	TTF2	Transcription termination factor 2 isoform X1. (1171 aa)
	CHD1L	chromodomain-helicase-DNA-binding protein 1-like isoform X1. (898 aa)
	SMARCAD1	annotation not available (1028 aa)
	HLTF	Helicase-like transcription factor isoform X1. (1008 aa)
	ATRX	Transcriptional regulator ATRX isoform X1. (2510 aa)
	CHD9	chromodomain-helicase-DNA-binding protein 9 isoform X1. (2902 aa)
	SMARCA4	Transcription activator BRG1 isoform X4. (1648 aa)
	SHPRH	E3 ubiquitin-protein ligase SHPRH isoform X1. (1685 aa)
	ERCC6L2	DNA excision repair protein ERCC-6-like 2 isoform X1. (1626 aa)

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTAF1	CHD1	A0A2Y9MVT9	A0A2Y9PX55	TATA-binding protein-associated factor 172 isoform X1.	chromodomain-helicase-DNA-binding protein 1 isoform X1.	0.447
BTAF1	CHD1L	A0A2Y9MVT9	A0A2Y9P8F0	TATA-binding protein-associated factor 172 isoform X1.	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	0.436
BTAF1	HELLS	A0A2Y9MVT9	A0A2Y9N0V4	TATA-binding protein-associated factor 172 isoform X1.	Lymphoid-specific helicase.	0.428
BTAF1	SMARCA1	A0A2Y9MVT9	A0A2Y9MDT3	TATA-binding protein-associated factor 172 isoform X1.	Probable global transcription activator SNF2L1 isoform X1.	0.525
BTAF1	SMARCA4	A0A2Y9MVT9	A0A2Y9LVE7	TATA-binding protein-associated factor 172 isoform X1.	Transcription activator BRG1 isoform X4.	0.400
BTAF1	SMARCA5	A0A2Y9MVT9	A0A2Y9QCQ9	TATA-binding protein-associated factor 172 isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.	0.531
CHD1	BTAF1	A0A2Y9PX55	A0A2Y9MVT9	chromodomain-helicase-DNA-binding protein 1 isoform X1.	TATA-binding protein-associated factor 172 isoform X1.	0.447
CHD1	CHD3	A0A2Y9PX55	A0A2Y9Q6N5	chromodomain-helicase-DNA-binding protein 1 isoform X1.	chromodomain-helicase-DNA-binding protein 3 isoform X1.	0.505
CHD1	SMARCA1	A0A2Y9PX55	A0A2Y9MDT3	chromodomain-helicase-DNA-binding protein 1 isoform X1.	Probable global transcription activator SNF2L1 isoform X1.	0.460
CHD1	SMARCA5	A0A2Y9PX55	A0A2Y9QCQ9	chromodomain-helicase-DNA-binding protein 1 isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.	0.461
CHD1L	BTAF1	A0A2Y9P8F0	A0A2Y9MVT9	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	TATA-binding protein-associated factor 172 isoform X1.	0.436
CHD1L	ERCC6	A0A2Y9P8F0	A0A2Y9MEF2	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	DNA excision repair protein ERCC-6.	0.540
CHD1L	ERCC6L	A0A2Y9P8F0	A0A2Y9MJT9	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	DNA excision repair protein ERCC-6-like.	0.475
CHD1L	ERCC6L2	A0A2Y9P8F0	A0A2Y9MB82	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	DNA excision repair protein ERCC-6-like 2 isoform X1.	0.450
CHD1L	HLTF	A0A2Y9P8F0	A0A2Y9P501	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	Helicase-like transcription factor isoform X1.	0.471
CHD1L	INO80	A0A2Y9P8F0	A0A2Y9PCX7	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	DNA helicase INO80 isoform X1.	0.414
CHD2	SMARCA1	A0A2Y9Q649	A0A2Y9MDT3	chromodomain-helicase-DNA-binding protein 2 isoform X1.	Probable global transcription activator SNF2L1 isoform X1.	0.426
CHD2	SMARCA5	A0A2Y9Q649	A0A2Y9QCQ9	chromodomain-helicase-DNA-binding protein 2 isoform X1.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.	0.425
CHD3	CHD1	A0A2Y9Q6N5	A0A2Y9PX55	chromodomain-helicase-DNA-binding protein 3 isoform X1.	chromodomain-helicase-DNA-binding protein 1 isoform X1.	0.505
CHD3	CHD4	A0A2Y9Q6N5	A0A2Y9NDV6	chromodomain-helicase-DNA-binding protein 3 isoform X1.	chromodomain-helicase-DNA-binding protein 4 isoform X1.	0.837