17 items (Delphinapterus leucas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TACSTD2	Tumor-associated calcium signal transducer 2. (323 aa)
	SPOCK3	Testican-3. (428 aa)
	SPOCK2	Testican-2. (423 aa)
	CD74	HLA class II histocompatibility antigen gamma chain isoform X1. (278 aa)
	SPOCK1	Testican-1 isoform X1. (442 aa)
	IGFBP6	Insulin-like growth factor-binding protein 6. (236 aa)
	EPCAM	Epithelial cell adhesion molecule. (314 aa)
	NID2	Nidogen-2. (1384 aa)
	IGFBP2	Insulin-like growth factor-binding protein 2 isoform X1. (320 aa)
	SMOC1	SPARC-related modular calcium-binding protein 1 isoform X1. (446 aa)
	IGFBP5	Insulin-like growth factor-binding protein 5. (271 aa)
	SMOC2	SPARC-related modular calcium-binding protein 2 isoform X1. (456 aa)
	IGFBP4	Insulin-like growth factor-binding protein 4. (258 aa)
	TG	Thyroglobulin isoform X2. (2770 aa)
	NID1	Nidogen-1 isoform X1. (1242 aa)
	IGFBP3	Insulin-like growth factor-binding protein 3. (293 aa)
	IGFBP1	Insulin-like growth factor-binding protein 1. (263 aa)

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IGFBP1	IGFBP3	A0A2Y9PUH5	A0A2Y9PUR5	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 3.	0.750
IGFBP1	IGFBP4	A0A2Y9PUH5	A0A2Y9M8H7	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 4.	0.803
IGFBP1	IGFBP6	A0A2Y9PUH5	A0A2Y9ND47	Insulin-like growth factor-binding protein 1.	Insulin-like growth factor-binding protein 6.	0.705
IGFBP2	IGFBP3	A0A2Y9MWD6	A0A2Y9PUR5	Insulin-like growth factor-binding protein 2 isoform X1.	Insulin-like growth factor-binding protein 3.	0.434
IGFBP2	IGFBP4	A0A2Y9MWD6	A0A2Y9M8H7	Insulin-like growth factor-binding protein 2 isoform X1.	Insulin-like growth factor-binding protein 4.	0.439
IGFBP2	IGFBP6	A0A2Y9MWD6	A0A2Y9ND47	Insulin-like growth factor-binding protein 2 isoform X1.	Insulin-like growth factor-binding protein 6.	0.433
IGFBP3	IGFBP1	A0A2Y9PUR5	A0A2Y9PUH5	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 1.	0.750
IGFBP3	IGFBP2	A0A2Y9PUR5	A0A2Y9MWD6	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 2 isoform X1.	0.434
IGFBP3	IGFBP4	A0A2Y9PUR5	A0A2Y9M8H7	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 4.	0.759
IGFBP3	IGFBP5	A0A2Y9PUR5	A0A2Y9MM57	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 5.	0.407
IGFBP3	IGFBP6	A0A2Y9PUR5	A0A2Y9ND47	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor-binding protein 6.	0.515
IGFBP4	IGFBP1	A0A2Y9M8H7	A0A2Y9PUH5	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 1.	0.803
IGFBP4	IGFBP2	A0A2Y9M8H7	A0A2Y9MWD6	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 2 isoform X1.	0.439
IGFBP4	IGFBP3	A0A2Y9M8H7	A0A2Y9PUR5	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 3.	0.759
IGFBP4	IGFBP5	A0A2Y9M8H7	A0A2Y9MM57	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 5.	0.416
IGFBP4	IGFBP6	A0A2Y9M8H7	A0A2Y9ND47	Insulin-like growth factor-binding protein 4.	Insulin-like growth factor-binding protein 6.	0.416
IGFBP5	IGFBP3	A0A2Y9MM57	A0A2Y9PUR5	Insulin-like growth factor-binding protein 5.	Insulin-like growth factor-binding protein 3.	0.407
IGFBP5	IGFBP4	A0A2Y9MM57	A0A2Y9M8H7	Insulin-like growth factor-binding protein 5.	Insulin-like growth factor-binding protein 4.	0.416
IGFBP6	IGFBP1	A0A2Y9ND47	A0A2Y9PUH5	Insulin-like growth factor-binding protein 6.	Insulin-like growth factor-binding protein 1.	0.705
IGFBP6	IGFBP2	A0A2Y9ND47	A0A2Y9MWD6	Insulin-like growth factor-binding protein 6.	Insulin-like growth factor-binding protein 2 isoform X1.	0.433