(19 nodes) Intraciliary transport particle B network (Physeter catodon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IFT80	Intraflagellar transport protein 80 homolog. (777 aa)
	HSPB11	Intraflagellar transport protein 25 homolog isoform X1. (146 aa)
	IFT52	Intraflagellar transport protein 52 homolog isoform X1. (446 aa)
	CLUAP1	Clusterin-associated protein 1 isoform X2. (431 aa)
	IFT81	Intraflagellar transport protein 81 homolog isoform X1. (676 aa)
	IFT74	Intraflagellar transport protein 74 homolog isoform X1. (600 aa)
	UBXN10	UBX domain-containing protein 10. (280 aa)
	ENSPCTP00005019785	annotation not available (172 aa)
	IFT20	Intraflagellar transport protein 20 homolog isoform X1. (132 aa)
	IFT46	Intraflagellar transport protein 46 homolog isoform X2. (304 aa)
	TRAF3IP1	TRAF3-interacting protein 1 isoform X1. (718 aa)
	IFT22	Intraflagellar transport protein 22 homolog. (185 aa)
	IFT88	Intraflagellar transport protein 88 homolog isoform X4. (867 aa)
	ENSPCTP00005013932	annotation not available (75 aa)
	IFT172	Intraflagellar transport protein 172 homolog isoform X2. (1748 aa)
	LOC102981961	Tetratricopeptide repeat protein 30A. (665 aa)
	LOC102980944	Tetratricopeptide repeat protein 30A-like. (665 aa)
	IFT57	Intraflagellar transport protein 57 homolog. (427 aa)
	TTC26	Intraflagellar transport protein 56 isoform X2. (554 aa)

Your Current Organism:

Physeter catodon

NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUAP1	ENSPCTP00005019785	ENSPCTP00005030208	ENSPCTP00005019785	Clusterin-associated protein 1 isoform X2.	annotation not available	0.866
CLUAP1	HSPB11	ENSPCTP00005030208	ENSPCTP00005032180	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 25 homolog isoform X1.	0.915
CLUAP1	IFT172	ENSPCTP00005030208	ENSPCTP00005011308	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 172 homolog isoform X2.	0.947
CLUAP1	IFT20	ENSPCTP00005030208	ENSPCTP00005019179	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 20 homolog isoform X1.	0.849
CLUAP1	IFT22	ENSPCTP00005030208	ENSPCTP00005014599	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 22 homolog.	0.911
CLUAP1	IFT46	ENSPCTP00005030208	ENSPCTP00005016106	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 46 homolog isoform X2.	0.966
CLUAP1	IFT52	ENSPCTP00005030208	ENSPCTP00005031037	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 52 homolog isoform X1.	0.977
CLUAP1	IFT57	ENSPCTP00005030208	ENSPCTP00005004330	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 57 homolog.	0.983
CLUAP1	IFT74	ENSPCTP00005030208	ENSPCTP00005024285	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 74 homolog isoform X1.	0.951
CLUAP1	IFT80	ENSPCTP00005030208	ENSPCTP00005000269	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 80 homolog.	0.980
CLUAP1	IFT81	ENSPCTP00005030208	ENSPCTP00005028957	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 81 homolog isoform X1.	0.973
CLUAP1	IFT88	ENSPCTP00005030208	ENSPCTP00005014063	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 88 homolog isoform X4.	0.972
CLUAP1	LOC102980944	ENSPCTP00005030208	ENSPCTP00005005087	Clusterin-associated protein 1 isoform X2.	Tetratricopeptide repeat protein 30A-like.	0.898
CLUAP1	LOC102981961	ENSPCTP00005030208	ENSPCTP00005005099	Clusterin-associated protein 1 isoform X2.	Tetratricopeptide repeat protein 30A.	0.898
CLUAP1	TRAF3IP1	ENSPCTP00005030208	ENSPCTP00005015277	Clusterin-associated protein 1 isoform X2.	TRAF3-interacting protein 1 isoform X1.	0.965
CLUAP1	TTC26	ENSPCTP00005030208	ENSPCTP00005003496	Clusterin-associated protein 1 isoform X2.	Intraflagellar transport protein 56 isoform X2.	0.968
CLUAP1	UBXN10	ENSPCTP00005030208	ENSPCTP00005022234	Clusterin-associated protein 1 isoform X2.	UBX domain-containing protein 10.	0.475
ENSPCTP00005013932	ENSPCTP00005019785	ENSPCTP00005013932	ENSPCTP00005019785	annotation not available	annotation not available	0.866
ENSPCTP00005013932	HSPB11	ENSPCTP00005013932	ENSPCTP00005032180	annotation not available	Intraflagellar transport protein 25 homolog isoform X1.	0.872
ENSPCTP00005013932	IFT172	ENSPCTP00005013932	ENSPCTP00005011308	annotation not available	Intraflagellar transport protein 172 homolog isoform X2.	0.947