(13 nodes) Mitochondrion distribution network (Physeter catodon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MEF2A	Myocyte-specific enhancer factor 2A isoform X2. (501 aa)
	MSTO1	Protein misato homolog 1 isoform X2. (571 aa)
	DNM1L	Dynamin-1-like protein isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (749 aa)
	LOC102975849	Trafficking kinesin-binding protein 1. (443 aa)
	LOC114484298	Trafficking kinesin-binding protein 1-like. (160 aa)
	LOC114483908	Trafficking kinesin-binding protein 1-like. (291 aa)
	LRRK2	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X2. (2567 aa)
	MTM1	Myotubularin isoform X4. (603 aa)
	BHLHA15	Class A basic helix-loop-helix protein 15 isoform X3. (185 aa)
	TRAK2	Trafficking kinesin-binding protein 2 isoform X1. (913 aa)
	ARMC1	Armadillo repeat-containing protein 1. (104 aa)
	CLUH	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family. (1248 aa)
	SLC4A5	Anion exchange protein. (1097 aa)

Your Current Organism:

Physeter catodon

NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNM1L	LRRK2	ENSPCTP00005017555	ENSPCTP00005025974	Dynamin-1-like protein isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X2.	0.698
LOC102975849	LOC114483908	ENSPCTP00005019642	ENSPCTP00005027048	Trafficking kinesin-binding protein 1.	Trafficking kinesin-binding protein 1-like.	0.749
LOC102975849	LOC114484298	ENSPCTP00005019642	ENSPCTP00005027791	Trafficking kinesin-binding protein 1.	Trafficking kinesin-binding protein 1-like.	0.880
LOC102975849	TRAK2	ENSPCTP00005019642	ENSPCTP00005002696	Trafficking kinesin-binding protein 1.	Trafficking kinesin-binding protein 2 isoform X1.	0.417
LOC114483908	LOC102975849	ENSPCTP00005027048	ENSPCTP00005019642	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 1.	0.749
LOC114483908	LOC114484298	ENSPCTP00005027048	ENSPCTP00005027791	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 1-like.	0.597
LOC114483908	TRAK2	ENSPCTP00005027048	ENSPCTP00005002696	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 2 isoform X1.	0.427
LOC114484298	LOC102975849	ENSPCTP00005027791	ENSPCTP00005019642	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 1.	0.880
LOC114484298	LOC114483908	ENSPCTP00005027791	ENSPCTP00005027048	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 1-like.	0.597
LOC114484298	TRAK2	ENSPCTP00005027791	ENSPCTP00005002696	Trafficking kinesin-binding protein 1-like.	Trafficking kinesin-binding protein 2 isoform X1.	0.417
LRRK2	DNM1L	ENSPCTP00005025974	ENSPCTP00005017555	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X2.	Dynamin-1-like protein isoform X2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.698
TRAK2	LOC102975849	ENSPCTP00005002696	ENSPCTP00005019642	Trafficking kinesin-binding protein 2 isoform X1.	Trafficking kinesin-binding protein 1.	0.417
TRAK2	LOC114483908	ENSPCTP00005002696	ENSPCTP00005027048	Trafficking kinesin-binding protein 2 isoform X1.	Trafficking kinesin-binding protein 1-like.	0.427
TRAK2	LOC114484298	ENSPCTP00005002696	ENSPCTP00005027791	Trafficking kinesin-binding protein 2 isoform X1.	Trafficking kinesin-binding protein 1-like.	0.417