(16 nodes) T-box transcription factor network (Physeter catodon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBX21	T-box transcription factor TBX21. (535 aa)
	TBXT	T-box transcription factor T isoform X1. (434 aa)
	TBX20	T-box transcription factor TBX20. (449 aa)
	TBX19	T-box transcription factor TBX19. (446 aa)
	TBX1	T-box transcription factor TBX1. (497 aa)
	TBR1	T-box brain protein 1. (681 aa)
	EOMES	Eomesodermin homolog isoform X1. (704 aa)
	TBX6	T-box transcription factor TBX6 isoform X2. (436 aa)
	TBX5	T-box transcription factor TBX5. (519 aa)
	TBX18	T-box transcription factor TBX18 isoform X1. (613 aa)
	TBX15	T-box transcription factor TBX15 isoform X1. (602 aa)
	TBX22	T-box transcription factor TBX22. (522 aa)
	MGA	MAX gene-associated protein isoform X3. (3067 aa)
	TBX3	T-box transcription factor TBX3 isoform X1. (745 aa)
	TBX2	T-box transcription factor TBX2. (712 aa)
	TBX4	T-box transcription factor TBX4. (559 aa)

Your Current Organism:

Physeter catodon

NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EOMES	TBX19	ENSPCTP00005016232	ENSPCTP00005004838	Eomesodermin homolog isoform X1.	T-box transcription factor TBX19.	0.560
EOMES	TBX21	ENSPCTP00005016232	ENSPCTP00005007282	Eomesodermin homolog isoform X1.	T-box transcription factor TBX21.	0.504
EOMES	TBXT	ENSPCTP00005016232	ENSPCTP00005002915	Eomesodermin homolog isoform X1.	T-box transcription factor T isoform X1.	0.567
TBR1	TBX19	ENSPCTP00005015948	ENSPCTP00005004838	T-box brain protein 1.	T-box transcription factor TBX19.	0.487
TBR1	TBX21	ENSPCTP00005015948	ENSPCTP00005007282	T-box brain protein 1.	T-box transcription factor TBX21.	0.450
TBR1	TBXT	ENSPCTP00005015948	ENSPCTP00005002915	T-box brain protein 1.	T-box transcription factor T isoform X1.	0.565
TBX19	EOMES	ENSPCTP00005004838	ENSPCTP00005016232	T-box transcription factor TBX19.	Eomesodermin homolog isoform X1.	0.560
TBX19	TBR1	ENSPCTP00005004838	ENSPCTP00005015948	T-box transcription factor TBX19.	T-box brain protein 1.	0.487
TBX19	TBX6	ENSPCTP00005004838	ENSPCTP00005019614	T-box transcription factor TBX19.	T-box transcription factor TBX6 isoform X2.	0.418
TBX21	EOMES	ENSPCTP00005007282	ENSPCTP00005016232	T-box transcription factor TBX21.	Eomesodermin homolog isoform X1.	0.504
TBX21	TBR1	ENSPCTP00005007282	ENSPCTP00005015948	T-box transcription factor TBX21.	T-box brain protein 1.	0.450
TBX21	TBX6	ENSPCTP00005007282	ENSPCTP00005019614	T-box transcription factor TBX21.	T-box transcription factor TBX6 isoform X2.	0.406
TBX6	TBX19	ENSPCTP00005019614	ENSPCTP00005004838	T-box transcription factor TBX6 isoform X2.	T-box transcription factor TBX19.	0.418
TBX6	TBX21	ENSPCTP00005019614	ENSPCTP00005007282	T-box transcription factor TBX6 isoform X2.	T-box transcription factor TBX21.	0.406
TBX6	TBXT	ENSPCTP00005019614	ENSPCTP00005002915	T-box transcription factor TBX6 isoform X2.	T-box transcription factor T isoform X1.	0.401
TBXT	EOMES	ENSPCTP00005002915	ENSPCTP00005016232	T-box transcription factor T isoform X1.	Eomesodermin homolog isoform X1.	0.567
TBXT	TBR1	ENSPCTP00005002915	ENSPCTP00005015948	T-box transcription factor T isoform X1.	T-box brain protein 1.	0.565
TBXT	TBX6	ENSPCTP00005002915	ENSPCTP00005019614	T-box transcription factor T isoform X1.	T-box transcription factor TBX6 isoform X2.	0.401