STRINGSTRING
LRIF1 LRIF1 PCGF5 PCGF5 SMCHD1 SMCHD1 G3T3L6_LOXAF G3T3L6_LOXAF JARID2 JARID2 RLIM RLIM PCGF3 PCGF3 SUZ12 SUZ12 HNRNPU HNRNPU YTHDC1 YTHDC1 G3TPG2_LOXAF G3TPG2_LOXAF CDYL CDYL EXOSC10 EXOSC10 PRDM14 PRDM14 BRCA1 BRCA1 METTL3 METTL3 RBM15 RBM15 RBM15B RBM15B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LRIF1Ligand dependent nuclear receptor interacting factor 1. (640 aa)
PCGF5Polycomb group ring finger 5. (256 aa)
SMCHD1SMC hinge domain-containing protein. (645 aa)
G3T3L6_LOXAFUncharacterized protein. (262 aa)
JARID2Jumonji and AT-rich interaction domain containing 2. (1236 aa)
RLIMRing finger protein, LIM domain interacting. (609 aa)
PCGF3Polycomb group ring finger 3. (242 aa)
SUZ12SUZ12 polycomb repressive complex 2 subunit. (739 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (824 aa)
YTHDC1YTH domain containing 1. (730 aa)
G3TPG2_LOXAFRING-type domain-containing protein. (603 aa)
CDYLChromodomain Y like. (542 aa)
EXOSC10Exosome component 10. (887 aa)
PRDM14PR/SET domain 14. (510 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1854 aa)
METTL3Methyltransferase like 3; Belongs to the MT-A70-like family. (580 aa)
RBM15RNA binding motif protein 15. (959 aa)
RBM15BRNA binding motif protein 15B. (563 aa)
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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