STRINGSTRING
SMARCD1 SMARCD1 MACROH2A1 MACROH2A1 G3T2J1_LOXAF G3T2J1_LOXAF EP300 EP300 VPS72 VPS72 SPHK2 SPHK2 G3TGQ4_LOXAF G3TGQ4_LOXAF CHEK1 CHEK1 PHF2 PHF2 PADI2 PADI2 G3UJJ0_LOXAF G3UJJ0_LOXAF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMARCD1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1. (515 aa)
MACROH2A1Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (372 aa)
G3T2J1_LOXAFUncharacterized protein. (405 aa)
EP300E1A binding protein p300. (2420 aa)
VPS72Vacuolar protein sorting 72 homolog. (363 aa)
SPHK2Sphingosine kinase 2. (615 aa)
G3TGQ4_LOXAFUncharacterized protein. (409 aa)
CHEK1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (475 aa)
PHF2PHD finger protein 2. (1073 aa)
PADI2Peptidyl arginine deiminase 2. (674 aa)
G3UJJ0_LOXAFUncharacterized protein. (423 aa)
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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