(13 nodes) Ubiquitin domain network (Equus caballus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS27A	Ribosomal protein S27a. (156 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ENSECAP00000044533	Ubiquitin-like domain-containing protein. (180 aa)
	ENSECAP00000043854	Ubiquitin-like domain-containing protein. (92 aa)
	UBD	Ubiquitin D. (171 aa)
	NEDD8	NEDD8 ubiquitin like modifier. (81 aa)
	FAU	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	UBC-2	Ubiquitin-related; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repa [...] (305 aa)
	UBC	Ubiquitin B. (305 aa)
	F6V625_HORSE	Ubiquitin-like domain-containing protein. (93 aa)
	ZFAND4	Zinc finger AN1-type containing 4. (740 aa)
	UBTD1	Ubiquitin domain containing 1. (227 aa)
	UBL4A	Ubiquitin like 4A. (159 aa)

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECAP00000043854	ENSECAP00000044533	ENSECAP00000043854	ENSECAP00000044533	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.588
ENSECAP00000043854	F6V625_HORSE	ENSECAP00000043854	ENSECAP00000004962	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.560
ENSECAP00000043854	FAU	ENSECAP00000043854	ENSECAP00000019440	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.707
ENSECAP00000043854	NEDD8	ENSECAP00000043854	ENSECAP00000040498	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.460
ENSECAP00000043854	RPS27A	ENSECAP00000043854	ENSECAP00000016396	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.791
ENSECAP00000043854	UBA52	ENSECAP00000043854	ENSECAP00000018080	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.869
ENSECAP00000043854	UBD	ENSECAP00000043854	ENSECAP00000041044	Ubiquitin-like domain-containing protein.	Ubiquitin D.	0.481
ENSECAP00000043854	UBL4A	ENSECAP00000043854	ENSECAP00000011241	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.413
ENSECAP00000044533	ENSECAP00000043854	ENSECAP00000044533	ENSECAP00000043854	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.588
ENSECAP00000044533	F6V625_HORSE	ENSECAP00000044533	ENSECAP00000004962	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.858
ENSECAP00000044533	FAU	ENSECAP00000044533	ENSECAP00000019440	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.995
ENSECAP00000044533	NEDD8	ENSECAP00000044533	ENSECAP00000040498	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.827
ENSECAP00000044533	UBA52	ENSECAP00000044533	ENSECAP00000018080	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.983
ENSECAP00000044533	UBC	ENSECAP00000044533	ENSECAP00000002343	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.781
ENSECAP00000044533	UBC-2	ENSECAP00000044533	ENSECAP00000035675	Ubiquitin-like domain-containing protein.	Ubiquitin-related; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repa [...]	0.781
ENSECAP00000044533	UBD	ENSECAP00000044533	ENSECAP00000041044	Ubiquitin-like domain-containing protein.	Ubiquitin D.	0.678
ENSECAP00000044533	UBL4A	ENSECAP00000044533	ENSECAP00000011241	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.556
ENSECAP00000044533	ZFAND4	ENSECAP00000044533	ENSECAP00000005825	Ubiquitin-like domain-containing protein.	Zinc finger AN1-type containing 4.	0.931
F6V625_HORSE	ENSECAP00000043854	ENSECAP00000004962	ENSECAP00000043854	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.560
F6V625_HORSE	ENSECAP00000044533	ENSECAP00000004962	ENSECAP00000044533	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.858