(29 nodes) beta-Alanine metabolism network (Equus caballus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAD2	Glutamate decarboxylase 2. (585 aa)
	ALDH3B2	Aldehyde dehydrogenase 3 family member B2; Belongs to the aldehyde dehydrogenase family. (380 aa)
	LOC100055638	Uncharacterized protein. (513 aa)
	ALDH3A1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (470 aa)
	ALDH7A1	Aldehyde dehydrogenase 7 family member A1; Belongs to the aldehyde dehydrogenase family. (566 aa)
	AOC2	Amine oxidase. (756 aa)
	GAD1	Glutamate decarboxylase 1. (594 aa)
	HADHA	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (762 aa)
	UPB1	Beta-ureidopropionase 1. (384 aa)
	ALDH2	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family. (625 aa)
	CNDP1	Carnosine dipeptidase 1. (506 aa)
	ACOX1	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (661 aa)
	EHHADH	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (723 aa)
	ALDH16A1	Aldehyde dehydrogenase family 16 member A1. (803 aa)
	ABAT	4-aminobutyrate aminotransferase. (604 aa)
	ACOX3	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (703 aa)
	GADL1	Glutamate decarboxylase like 1. (521 aa)
	ACADS	Acyl-CoA dehydrogenase short chain. (412 aa)
	ALDH6A1	Aldehyde dehydrogenase 6 family member A1. (568 aa)
	ALDH3B1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (498 aa)
	DPYD	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family. (1025 aa)
	ALDH3A2	Aldehyde dehydrogenase 3 family member A2; Belongs to the aldehyde dehydrogenase family. (595 aa)
	AOC3	Amine oxidase. (763 aa)
	ECHS1	Enoyl-CoA hydratase, short chain 1; Belongs to the enoyl-CoA hydratase/isomerase family. (312 aa)
	DPYS	Dihydropyrimidinase. (539 aa)
	MLYCD	Malonyl-CoA decarboxylase. (568 aa)
	TMCO1	Aldehyde dehydrogenase 9 family member A1; Belongs to the aldehyde dehydrogenase family. (565 aa)
	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (389 aa)
	CARNS1	Carnosine synthase 1. (953 aa)

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	ACADS	ENSECAP00000021263	ENSECAP00000026219	4-aminobutyrate aminotransferase.	Acyl-CoA dehydrogenase short chain.	0.815
ABAT	ACOX1	ENSECAP00000021263	ENSECAP00000020757	4-aminobutyrate aminotransferase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.821
ABAT	ACOX3	ENSECAP00000021263	ENSECAP00000024870	4-aminobutyrate aminotransferase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.815
ABAT	ALDH16A1	ENSECAP00000021263	ENSECAP00000021140	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase family 16 member A1.	0.945
ABAT	ALDH2	ENSECAP00000021263	ENSECAP00000015826	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.945
ABAT	ALDH3A1	ENSECAP00000021263	ENSECAP00000008456	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.944
ABAT	ALDH3A2	ENSECAP00000021263	ENSECAP00000033082	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase 3 family member A2; Belongs to the aldehyde dehydrogenase family.	0.944
ABAT	ALDH3B1	ENSECAP00000021263	ENSECAP00000027431	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.944
ABAT	ALDH3B2	ENSECAP00000021263	ENSECAP00000002891	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase 3 family member B2; Belongs to the aldehyde dehydrogenase family.	0.944
ABAT	ALDH6A1	ENSECAP00000021263	ENSECAP00000026570	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase 6 family member A1.	0.944
ABAT	ALDH7A1	ENSECAP00000021263	ENSECAP00000008893	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase 7 family member A1; Belongs to the aldehyde dehydrogenase family.	0.942
ABAT	CARNS1	ENSECAP00000021263	ENSECAP00000051746	4-aminobutyrate aminotransferase.	Carnosine synthase 1.	0.903
ABAT	CNDP1	ENSECAP00000021263	ENSECAP00000020525	4-aminobutyrate aminotransferase.	Carnosine dipeptidase 1.	0.944
ABAT	EHHADH	ENSECAP00000021263	ENSECAP00000021102	4-aminobutyrate aminotransferase.	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.924
ABAT	GAD1	ENSECAP00000021263	ENSECAP00000011080	4-aminobutyrate aminotransferase.	Glutamate decarboxylase 1.	0.965
ABAT	GAD2	ENSECAP00000021263	ENSECAP00000000059	4-aminobutyrate aminotransferase.	Glutamate decarboxylase 2.	0.959
ABAT	GADL1	ENSECAP00000021263	ENSECAP00000026187	4-aminobutyrate aminotransferase.	Glutamate decarboxylase like 1.	0.941
ABAT	LOC100055638	ENSECAP00000021263	ENSECAP00000007595	4-aminobutyrate aminotransferase.	Uncharacterized protein.	0.955
ABAT	TMCO1	ENSECAP00000021263	ENSECAP00000048314	4-aminobutyrate aminotransferase.	Aldehyde dehydrogenase 9 family member A1; Belongs to the aldehyde dehydrogenase family.	0.945
ABAT	UPB1	ENSECAP00000021263	ENSECAP00000015367	4-aminobutyrate aminotransferase.	Beta-ureidopropionase 1.	0.943