(9 nodes) Sulfur metabolism network (Equus caballus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TST	Sulfurtransferase. (472 aa)
	SQOR	Pyr_redox_2 domain-containing protein. (450 aa)
	ETHE1	ETHE1 persulfide dioxygenase. (254 aa)
	SUOX	Sulfite oxidase. (564 aa)
	BPNT1	3'(2'), 5'-bisphosphate nucleotidase 1. (323 aa)
	IMPAD1	Inositol monophosphatase domain containing 1. (360 aa)
	PAPSS1	3'-phosphoadenosine 5'-phosphosulfate synthase 1. (635 aa)
	PAPSS2	3'-phosphoadenosine 5'-phosphosulfate synthase 2. (628 aa)
	MPST	Sulfurtransferase. (664 aa)

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPNT1	IMPAD1	ENSECAP00000031118	ENSECAP00000032497	3'(2'), 5'-bisphosphate nucleotidase 1.	Inositol monophosphatase domain containing 1.	0.933
BPNT1	PAPSS1	ENSECAP00000031118	ENSECAP00000032968	3'(2'), 5'-bisphosphate nucleotidase 1.	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	0.958
BPNT1	PAPSS2	ENSECAP00000031118	ENSECAP00000035030	3'(2'), 5'-bisphosphate nucleotidase 1.	3'-phosphoadenosine 5'-phosphosulfate synthase 2.	0.958
ETHE1	MPST	ENSECAP00000008805	ENSECAP00000037158	ETHE1 persulfide dioxygenase.	Sulfurtransferase.	0.947
ETHE1	SQOR	ENSECAP00000008805	ENSECAP00000007030	ETHE1 persulfide dioxygenase.	Pyr_redox_2 domain-containing protein.	0.994
ETHE1	SUOX	ENSECAP00000008805	ENSECAP00000020960	ETHE1 persulfide dioxygenase.	Sulfite oxidase.	0.974
ETHE1	TST	ENSECAP00000008805	ENSECAP00000001546	ETHE1 persulfide dioxygenase.	Sulfurtransferase.	0.937
IMPAD1	BPNT1	ENSECAP00000032497	ENSECAP00000031118	Inositol monophosphatase domain containing 1.	3'(2'), 5'-bisphosphate nucleotidase 1.	0.933
IMPAD1	PAPSS1	ENSECAP00000032497	ENSECAP00000032968	Inositol monophosphatase domain containing 1.	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	0.958
IMPAD1	PAPSS2	ENSECAP00000032497	ENSECAP00000035030	Inositol monophosphatase domain containing 1.	3'-phosphoadenosine 5'-phosphosulfate synthase 2.	0.958
MPST	ETHE1	ENSECAP00000037158	ENSECAP00000008805	Sulfurtransferase.	ETHE1 persulfide dioxygenase.	0.947
MPST	SQOR	ENSECAP00000037158	ENSECAP00000007030	Sulfurtransferase.	Pyr_redox_2 domain-containing protein.	0.592
MPST	SUOX	ENSECAP00000037158	ENSECAP00000020960	Sulfurtransferase.	Sulfite oxidase.	0.988
MPST	TST	ENSECAP00000037158	ENSECAP00000001546	Sulfurtransferase.	Sulfurtransferase.	0.916
PAPSS1	BPNT1	ENSECAP00000032968	ENSECAP00000031118	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	3'(2'), 5'-bisphosphate nucleotidase 1.	0.958
PAPSS1	IMPAD1	ENSECAP00000032968	ENSECAP00000032497	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	Inositol monophosphatase domain containing 1.	0.958
PAPSS1	PAPSS2	ENSECAP00000032968	ENSECAP00000035030	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	3'-phosphoadenosine 5'-phosphosulfate synthase 2.	0.901
PAPSS1	SUOX	ENSECAP00000032968	ENSECAP00000020960	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	Sulfite oxidase.	0.978
PAPSS2	BPNT1	ENSECAP00000035030	ENSECAP00000031118	3'-phosphoadenosine 5'-phosphosulfate synthase 2.	3'(2'), 5'-bisphosphate nucleotidase 1.	0.958
PAPSS2	IMPAD1	ENSECAP00000035030	ENSECAP00000032497	3'-phosphoadenosine 5'-phosphosulfate synthase 2.	Inositol monophosphatase domain containing 1.	0.958